Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33161 | 5' | -49.7 | NC_007497.1 | + | 34144 | 1.09 | 0.002846 |
Target: 5'- cUUUUCCUCGACGCCGAGAUUUUCGGCc -3' miRNA: 3'- -AAAAGGAGCUGCGGCUCUAAAAGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 5960 | 0.76 | 0.419143 |
Target: 5'- -gUUgCUCGACGCCGcGAcacagUCGGCg -3' miRNA: 3'- aaAAgGAGCUGCGGCuCUaaa--AGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 5454 | 0.74 | 0.492307 |
Target: 5'- ----aCUCGACGCCGAuucucUUCGGCg -3' miRNA: 3'- aaaagGAGCUGCGGCUcuaa-AAGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 1456 | 0.72 | 0.605469 |
Target: 5'- ---aCCUCaACGUCGAGA---UCGGCa -3' miRNA: 3'- aaaaGGAGcUGCGGCUCUaaaAGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 10426 | 0.72 | 0.617086 |
Target: 5'- -cUUCaguUCGGCGCCGAagccGUUUUUGGCa -3' miRNA: 3'- aaAAGg--AGCUGCGGCUc---UAAAAGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 32753 | 0.72 | 0.651978 |
Target: 5'- -cUUCCUCGGCGCgcccagCGGcGUUcUCGGCg -3' miRNA: 3'- aaAAGGAGCUGCG------GCUcUAAaAGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 37210 | 0.71 | 0.675157 |
Target: 5'- gUUUCCgUCGAccgagaauuCGCCGGGAUc--CGGCa -3' miRNA: 3'- aAAAGG-AGCU---------GCGGCUCUAaaaGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 2368 | 0.71 | 0.679774 |
Target: 5'- ---gCCUCGACGauCCGAGAUUgaaggaauacaucCGGCg -3' miRNA: 3'- aaaaGGAGCUGC--GGCUCUAAaa-----------GCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 37874 | 0.71 | 0.686684 |
Target: 5'- ---cCCUgGGCGaCCGGGA---UCGGCa -3' miRNA: 3'- aaaaGGAgCUGC-GGCUCUaaaAGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 14615 | 0.7 | 0.720864 |
Target: 5'- -gUUCC-CGcACGCC-AGAUcgUCGGCa -3' miRNA: 3'- aaAAGGaGC-UGCGGcUCUAaaAGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 30117 | 0.7 | 0.732078 |
Target: 5'- ---aCCUCGcGCGCgGAGcAUggcgUCGGCg -3' miRNA: 3'- aaaaGGAGC-UGCGgCUC-UAaa--AGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 10650 | 0.69 | 0.79654 |
Target: 5'- ---aUCUCGGCGUCGAGGaaaagUCGcGCg -3' miRNA: 3'- aaaaGGAGCUGCGGCUCUaaa--AGC-CG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 26165 | 0.69 | 0.79654 |
Target: 5'- ---cCCUgcACGCCGGGAccgUCGGCc -3' miRNA: 3'- aaaaGGAgcUGCGGCUCUaaaAGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 15699 | 0.68 | 0.823465 |
Target: 5'- gUUUCgUCGACaGCCGAGGccgugcgggcacugUCGGUa -3' miRNA: 3'- aAAAGgAGCUG-CGGCUCUaaa-----------AGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 35308 | 0.68 | 0.845118 |
Target: 5'- ---aUCUUGAcuauauCGUCGAGGUgUUCGGCa -3' miRNA: 3'- aaaaGGAGCU------GCGGCUCUAaAAGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 26131 | 0.68 | 0.854128 |
Target: 5'- --gUCCUCGuAUGCCGccucaucGGUagUCGGCu -3' miRNA: 3'- aaaAGGAGC-UGCGGCu------CUAaaAGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 42822 | 0.67 | 0.887482 |
Target: 5'- ---gCCcCGACGCCGccgcGAUg--CGGCg -3' miRNA: 3'- aaaaGGaGCUGCGGCu---CUAaaaGCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 15407 | 0.67 | 0.892094 |
Target: 5'- gUUUUCUCGACGUCGGccgcgacgUGGCg -3' miRNA: 3'- aAAAGGAGCUGCGGCUcuaaaa--GCCG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 25634 | 0.67 | 0.89511 |
Target: 5'- -cUUCCUCcuGACGuuGGGAUagUUGaGCg -3' miRNA: 3'- aaAAGGAG--CUGCggCUCUAaaAGC-CG- -5' |
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33161 | 5' | -49.7 | NC_007497.1 | + | 26933 | 0.67 | 0.89511 |
Target: 5'- --aUCCauacCG-CGCCGAGAccggaUCGGCa -3' miRNA: 3'- aaaAGGa---GCuGCGGCUCUaaa--AGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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