miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33161 5' -49.7 NC_007497.1 + 34144 1.09 0.002846
Target:  5'- cUUUUCCUCGACGCCGAGAUUUUCGGCc -3'
miRNA:   3'- -AAAAGGAGCUGCGGCUCUAAAAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 14785 0.66 0.922613
Target:  5'- -cUUgCUCGuCGCCGAcugc-UCGGCg -3'
miRNA:   3'- aaAAgGAGCuGCGGCUcuaaaAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 10723 0.66 0.922613
Target:  5'- cUUUCUUCGGC-CCGAGAU--UCGcCa -3'
miRNA:   3'- aAAAGGAGCUGcGGCUCUAaaAGCcG- -5'
33161 5' -49.7 NC_007497.1 + 35511 0.66 0.909471
Target:  5'- --gUUCUCGACGgUGAGcUUgccguccUCGGCg -3'
miRNA:   3'- aaaAGGAGCUGCgGCUCuAAa------AGCCG- -5'
33161 5' -49.7 NC_007497.1 + 26933 0.67 0.89511
Target:  5'- --aUCCauacCG-CGCCGAGAccggaUCGGCa -3'
miRNA:   3'- aaaAGGa---GCuGCGGCUCUaaa--AGCCG- -5'
33161 5' -49.7 NC_007497.1 + 42822 0.67 0.887482
Target:  5'- ---gCCcCGACGCCGccgcGAUg--CGGCg -3'
miRNA:   3'- aaaaGGaGCUGCGGCu---CUAaaaGCCG- -5'
33161 5' -49.7 NC_007497.1 + 26131 0.68 0.854128
Target:  5'- --gUCCUCGuAUGCCGccucaucGGUagUCGGCu -3'
miRNA:   3'- aaaAGGAGC-UGCGGCu------CUAaaAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 35308 0.68 0.845118
Target:  5'- ---aUCUUGAcuauauCGUCGAGGUgUUCGGCa -3'
miRNA:   3'- aaaaGGAGCU------GCGGCUCUAaAAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 26165 0.69 0.79654
Target:  5'- ---cCCUgcACGCCGGGAccgUCGGCc -3'
miRNA:   3'- aaaaGGAgcUGCGGCUCUaaaAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 37210 0.71 0.675157
Target:  5'- gUUUCCgUCGAccgagaauuCGCCGGGAUc--CGGCa -3'
miRNA:   3'- aAAAGG-AGCU---------GCGGCUCUAaaaGCCG- -5'
33161 5' -49.7 NC_007497.1 + 32753 0.72 0.651978
Target:  5'- -cUUCCUCGGCGCgcccagCGGcGUUcUCGGCg -3'
miRNA:   3'- aaAAGGAGCUGCG------GCUcUAAaAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 10426 0.72 0.617086
Target:  5'- -cUUCaguUCGGCGCCGAagccGUUUUUGGCa -3'
miRNA:   3'- aaAAGg--AGCUGCGGCUc---UAAAAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 10650 0.69 0.79654
Target:  5'- ---aUCUCGGCGUCGAGGaaaagUCGcGCg -3'
miRNA:   3'- aaaaGGAGCUGCGGCUCUaaa--AGC-CG- -5'
33161 5' -49.7 NC_007497.1 + 30117 0.7 0.732078
Target:  5'- ---aCCUCGcGCGCgGAGcAUggcgUCGGCg -3'
miRNA:   3'- aaaaGGAGC-UGCGgCUC-UAaa--AGCCG- -5'
33161 5' -49.7 NC_007497.1 + 14615 0.7 0.720864
Target:  5'- -gUUCC-CGcACGCC-AGAUcgUCGGCa -3'
miRNA:   3'- aaAAGGaGC-UGCGGcUCUAaaAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 37874 0.71 0.686684
Target:  5'- ---cCCUgGGCGaCCGGGA---UCGGCa -3'
miRNA:   3'- aaaaGGAgCUGC-GGCUCUaaaAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 2368 0.71 0.679774
Target:  5'- ---gCCUCGACGauCCGAGAUUgaaggaauacaucCGGCg -3'
miRNA:   3'- aaaaGGAGCUGC--GGCUCUAAaa-----------GCCG- -5'
33161 5' -49.7 NC_007497.1 + 1456 0.72 0.605469
Target:  5'- ---aCCUCaACGUCGAGA---UCGGCa -3'
miRNA:   3'- aaaaGGAGcUGCGGCUCUaaaAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 5454 0.74 0.492307
Target:  5'- ----aCUCGACGCCGAuucucUUCGGCg -3'
miRNA:   3'- aaaagGAGCUGCGGCUcuaa-AAGCCG- -5'
33161 5' -49.7 NC_007497.1 + 1872 0.66 0.920083
Target:  5'- --aUCCUCGACGCacucg----CGGCa -3'
miRNA:   3'- aaaAGGAGCUGCGgcucuaaaaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.