miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33162 3' -50.7 NC_007497.1 + 33089 0.66 0.924292
Target:  5'- cGCGUAGUcggccagcucgGCGUCgaucUGcgCGcugCGUUCCu -3'
miRNA:   3'- -CGCAUCG-----------CGCAG----ACuaGCua-GCAAGG- -5'
33162 3' -50.7 NC_007497.1 + 28074 0.66 0.917488
Target:  5'- cCGUAGCGCGUUgagcgagUGcAUCG-UCGaccUUCCu -3'
miRNA:   3'- cGCAUCGCGCAG-------AC-UAGCuAGC---AAGG- -5'
33162 3' -50.7 NC_007497.1 + 38169 0.66 0.911658
Target:  5'- cCGUGGCGCGcCUGAgcgccuuagUCGAcugCGcUUUCg -3'
miRNA:   3'- cGCAUCGCGCaGACU---------AGCUa--GC-AAGG- -5'
33162 3' -50.7 NC_007497.1 + 3704 0.66 0.904905
Target:  5'- gGCGUAGCGCugcucgGUCUuGUUcAUCGcgCCg -3'
miRNA:   3'- -CGCAUCGCG------CAGAcUAGcUAGCaaGG- -5'
33162 3' -50.7 NC_007497.1 + 160 0.66 0.897864
Target:  5'- uGCGUuuuGCagaGCGUCUGuauGUUGGUCGggUCg -3'
miRNA:   3'- -CGCAu--CG---CGCAGAC---UAGCUAGCaaGG- -5'
33162 3' -50.7 NC_007497.1 + 17333 0.66 0.897864
Target:  5'- cGUGUacacGGCgGCGaacgUGAUCGAuggcUCGUUCCg -3'
miRNA:   3'- -CGCA----UCG-CGCag--ACUAGCU----AGCAAGG- -5'
33162 3' -50.7 NC_007497.1 + 24485 0.67 0.882936
Target:  5'- aGCGUAGCGUcgagcugcauGUCgUGcUCGGUCGc-CCa -3'
miRNA:   3'- -CGCAUCGCG----------CAG-ACuAGCUAGCaaGG- -5'
33162 3' -50.7 NC_007497.1 + 27821 0.67 0.882936
Target:  5'- aCGU-GCGCGUCUcagGAUCGua-GUUCg -3'
miRNA:   3'- cGCAuCGCGCAGA---CUAGCuagCAAGg -5'
33162 3' -50.7 NC_007497.1 + 36168 0.68 0.849859
Target:  5'- gGCGgGGCGCGUCggccgccCGGUCGUguggCUg -3'
miRNA:   3'- -CGCaUCGCGCAGacua---GCUAGCAa---GG- -5'
33162 3' -50.7 NC_007497.1 + 1416 0.68 0.812917
Target:  5'- gGCGUGGCgcaGCGUCcGAUUGcgCGg-CCa -3'
miRNA:   3'- -CGCAUCG---CGCAGaCUAGCuaGCaaGG- -5'
33162 3' -50.7 NC_007497.1 + 33671 0.69 0.793194
Target:  5'- cGCGagcucGCGCGUCaGAuugUCGAU-GUUCCg -3'
miRNA:   3'- -CGCau---CGCGCAGaCU---AGCUAgCAAGG- -5'
33162 3' -50.7 NC_007497.1 + 20947 0.69 0.783059
Target:  5'- cGCGccuggAGCaCGUCUGAUCGAgcacgCGgagCCc -3'
miRNA:   3'- -CGCa----UCGcGCAGACUAGCUa----GCaa-GG- -5'
33162 3' -50.7 NC_007497.1 + 20786 0.71 0.685849
Target:  5'- cGCGUGcuCGCGguucggacgaUGAUCGAUCuGUUCCu -3'
miRNA:   3'- -CGCAUc-GCGCag--------ACUAGCUAG-CAAGG- -5'
33162 3' -50.7 NC_007497.1 + 2035 0.71 0.652016
Target:  5'- gGCGUaccGGCGCGguUCUGAUCGAgccaugCGUg-- -3'
miRNA:   3'- -CGCA---UCGCGC--AGACUAGCUa-----GCAagg -5'
33162 3' -50.7 NC_007497.1 + 36824 0.72 0.584111
Target:  5'- uGCGUugcuGCGCGgccugCUGAUCuugUGUUCCa -3'
miRNA:   3'- -CGCAu---CGCGCa----GACUAGcuaGCAAGG- -5'
33162 3' -50.7 NC_007497.1 + 29786 0.76 0.395711
Target:  5'- cGCG-AGCGCGaaCUGGUCGGUCGgagUCg -3'
miRNA:   3'- -CGCaUCGCGCa-GACUAGCUAGCa--AGg -5'
33162 3' -50.7 NC_007497.1 + 16077 0.76 0.385476
Target:  5'- gGCGcgGGCGCGUCUGGcucaauccgccguUCGGUCGUgaggCUu -3'
miRNA:   3'- -CGCa-UCGCGCAGACU-------------AGCUAGCAa---GG- -5'
33162 3' -50.7 NC_007497.1 + 34744 1.14 0.001234
Target:  5'- cGCGUAGCGCGUCUGAUCGAUCGUUCCc -3'
miRNA:   3'- -CGCAUCGCGCAGACUAGCUAGCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.