miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33163 3' -55.8 NC_007497.1 + 7692 0.66 0.607204
Target:  5'- aGUCGCAauuCCUGuucguuggcAUGGuGCGGCAGUACa -3'
miRNA:   3'- -UAGCGUc--GGAC---------UGCC-CGUCGUUAUGg -5'
33163 3' -55.8 NC_007497.1 + 1973 0.66 0.606078
Target:  5'- cAUCGCGGC--GGCgucgGGGCAGCGAUcgaaggcgacgaaGCCc -3'
miRNA:   3'- -UAGCGUCGgaCUG----CCCGUCGUUA-------------UGG- -5'
33163 3' -55.8 NC_007497.1 + 12270 0.66 0.59595
Target:  5'- cUCgGCGGaCUGGCGGGCGGCc----- -3'
miRNA:   3'- uAG-CGUCgGACUGCCCGUCGuuaugg -5'
33163 3' -55.8 NC_007497.1 + 27769 0.66 0.589213
Target:  5'- -gCGCGGCCUGcuugccagccuGCGcagaacacaucgaacGGCGGCAucgauUGCCa -3'
miRNA:   3'- uaGCGUCGGAC-----------UGC---------------CCGUCGUu----AUGG- -5'
33163 3' -55.8 NC_007497.1 + 21026 0.66 0.572434
Target:  5'- cUCGCGGCCgccgUGAgcuucgcauacaaCGucGGCAGCGGUGCg -3'
miRNA:   3'- uAGCGUCGG----ACU-------------GC--CCGUCGUUAUGg -5'
33163 3' -55.8 NC_007497.1 + 34317 0.66 0.56242
Target:  5'- --aGCAGCCaGAC-GGCAGCGugAUCg -3'
miRNA:   3'- uagCGUCGGaCUGcCCGUCGUuaUGG- -5'
33163 3' -55.8 NC_007497.1 + 28217 0.66 0.56242
Target:  5'- --aGCGGCCcaagcaauCGGGCAGgGAUGCa -3'
miRNA:   3'- uagCGUCGGacu-----GCCCGUCgUUAUGg -5'
33163 3' -55.8 NC_007497.1 + 4397 0.67 0.518573
Target:  5'- --gGCGGcCCUGACGGGCccgguuGGCGcuGUuCCg -3'
miRNA:   3'- uagCGUC-GGACUGCCCG------UCGU--UAuGG- -5'
33163 3' -55.8 NC_007497.1 + 35156 0.67 0.518573
Target:  5'- cGUCGCGGCCggcgcGcCGGGUgugaAGCAucgAUACUa -3'
miRNA:   3'- -UAGCGUCGGa----CuGCCCG----UCGU---UAUGG- -5'
33163 3' -55.8 NC_007497.1 + 7099 0.67 0.518573
Target:  5'- uUgGCGGagcGACGGGCGGCAAguCCg -3'
miRNA:   3'- uAgCGUCggaCUGCCCGUCGUUauGG- -5'
33163 3' -55.8 NC_007497.1 + 6081 0.67 0.517493
Target:  5'- -aUGCGGCaauuCGGGCGGCGAUucugaaaaucacgGCCg -3'
miRNA:   3'- uaGCGUCGgacuGCCCGUCGUUA-------------UGG- -5'
33163 3' -55.8 NC_007497.1 + 40630 0.67 0.507816
Target:  5'- -cCGCAGCUcg--GGGCGGCAugACCg -3'
miRNA:   3'- uaGCGUCGGacugCCCGUCGUuaUGG- -5'
33163 3' -55.8 NC_007497.1 + 42241 0.67 0.507816
Target:  5'- --aGCAGCCgG-UGGGCAGgaucguccguCAAUACCu -3'
miRNA:   3'- uagCGUCGGaCuGCCCGUC----------GUUAUGG- -5'
33163 3' -55.8 NC_007497.1 + 11000 0.67 0.497155
Target:  5'- -aCGCAGCCga--GGcGCGGCAG-GCCg -3'
miRNA:   3'- uaGCGUCGGacugCC-CGUCGUUaUGG- -5'
33163 3' -55.8 NC_007497.1 + 12534 0.67 0.497155
Target:  5'- --gGCAGCggugcuggugCUGGCGGGCAGUucGGUGgCg -3'
miRNA:   3'- uagCGUCG----------GACUGCCCGUCG--UUAUgG- -5'
33163 3' -55.8 NC_007497.1 + 37153 0.68 0.486596
Target:  5'- cUCGCcGCUUGcACGGGCcgugcggagaAGCGAcUGCCc -3'
miRNA:   3'- uAGCGuCGGAC-UGCCCG----------UCGUU-AUGG- -5'
33163 3' -55.8 NC_007497.1 + 8609 0.68 0.476144
Target:  5'- -cCGCAGCCacacGAcCGGGCGGCcgacgcGCCc -3'
miRNA:   3'- uaGCGUCGGa---CU-GCCCGUCGuua---UGG- -5'
33163 3' -55.8 NC_007497.1 + 27574 0.68 0.465805
Target:  5'- -gCGUcuGCCUGcGCGGGCGGCugcggggcgGCCg -3'
miRNA:   3'- uaGCGu-CGGAC-UGCCCGUCGuua------UGG- -5'
33163 3' -55.8 NC_007497.1 + 19592 0.68 0.435512
Target:  5'- uGUCGCcGCCgauaUGuCGGGCGGUGA-GCCg -3'
miRNA:   3'- -UAGCGuCGG----ACuGCCCGUCGUUaUGG- -5'
33163 3' -55.8 NC_007497.1 + 42576 0.68 0.435512
Target:  5'- cUgGCGGCCUGcCGuGGCgAGCcGUGCUa -3'
miRNA:   3'- uAgCGUCGGACuGC-CCG-UCGuUAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.