miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33164 3' -57.3 NC_007497.1 + 37163 0.66 0.533817
Target:  5'- cGCaucGGGCGGGUCAUCGagggGgCUGAg -3'
miRNA:   3'- aCG---UCCGCUCAGUAGCgaa-CgGGCUg -5'
33164 3' -57.3 NC_007497.1 + 18801 0.66 0.523083
Target:  5'- aUGCcGGCGuGUgGUCGCU-GCaguCGGCg -3'
miRNA:   3'- -ACGuCCGCuCAgUAGCGAaCGg--GCUG- -5'
33164 3' -57.3 NC_007497.1 + 5930 0.66 0.511373
Target:  5'- cGCGGGUgucGAGgaugaCGUCGUgcagaugUUGCUCGACg -3'
miRNA:   3'- aCGUCCG---CUCa----GUAGCG-------AACGGGCUG- -5'
33164 3' -57.3 NC_007497.1 + 17533 0.66 0.501874
Target:  5'- cGCAGGCGcAGgcaCAUCGCgucgGCCaaugGAUu -3'
miRNA:   3'- aCGUCCGC-UCa--GUAGCGaa--CGGg---CUG- -5'
33164 3' -57.3 NC_007497.1 + 32411 0.66 0.491411
Target:  5'- aUGCAGG-GAuacuGUCGcUCGUcgacgUGCCCGGCc -3'
miRNA:   3'- -ACGUCCgCU----CAGU-AGCGa----ACGGGCUG- -5'
33164 3' -57.3 NC_007497.1 + 3758 0.67 0.460656
Target:  5'- cUGCAuGCGAGUCuUUGC--GUCCGGCu -3'
miRNA:   3'- -ACGUcCGCUCAGuAGCGaaCGGGCUG- -5'
33164 3' -57.3 NC_007497.1 + 35366 0.67 0.43095
Target:  5'- cGCuGGCGccGGUCGcuUCGUUcGCUCGACc -3'
miRNA:   3'- aCGuCCGC--UCAGU--AGCGAaCGGGCUG- -5'
33164 3' -57.3 NC_007497.1 + 10391 0.68 0.411781
Target:  5'- aUGCAGGCGccgcucgaucaGGUCAUCGacaaauaCCGGCa -3'
miRNA:   3'- -ACGUCCGC-----------UCAGUAGCgaacg--GGCUG- -5'
33164 3' -57.3 NC_007497.1 + 3893 0.68 0.406134
Target:  5'- cGCGGucgucaucuucggucGCGAGUCGUCGUgcacgcgUGCCguccCGACg -3'
miRNA:   3'- aCGUC---------------CGCUCAGUAGCGa------ACGG----GCUG- -5'
33164 3' -57.3 NC_007497.1 + 3853 0.68 0.393149
Target:  5'- uUGC-GGCGucggcagccucGGUCAUCGCgaUGgCCGGCg -3'
miRNA:   3'- -ACGuCCGC-----------UCAGUAGCGa-ACgGGCUG- -5'
33164 3' -57.3 NC_007497.1 + 15314 0.68 0.393149
Target:  5'- aGCGGGgGA-UCA-CGC-UGCCCGAUu -3'
miRNA:   3'- aCGUCCgCUcAGUaGCGaACGGGCUG- -5'
33164 3' -57.3 NC_007497.1 + 34581 0.68 0.393149
Target:  5'- cGCGGGCG-GcCGcCGUUUGCgCGACc -3'
miRNA:   3'- aCGUCCGCuCaGUaGCGAACGgGCUG- -5'
33164 3' -57.3 NC_007497.1 + 14564 0.68 0.38404
Target:  5'- gUGCAGGuCGAguucacgcuGUCGUCGCc-GCUCGAUu -3'
miRNA:   3'- -ACGUCC-GCU---------CAGUAGCGaaCGGGCUG- -5'
33164 3' -57.3 NC_007497.1 + 19890 0.69 0.357568
Target:  5'- aUGCAGGgaCGGGUCAUCGagucagGCCaGACc -3'
miRNA:   3'- -ACGUCC--GCUCAGUAGCgaa---CGGgCUG- -5'
33164 3' -57.3 NC_007497.1 + 27610 0.72 0.226292
Target:  5'- uUGCAGGCGA---AUCGCg-GCUCGACg -3'
miRNA:   3'- -ACGUCCGCUcagUAGCGaaCGGGCUG- -5'
33164 3' -57.3 NC_007497.1 + 36164 0.72 0.214539
Target:  5'- aGCGGGCGGGgcgCGUCGgccGCCCGGu -3'
miRNA:   3'- aCGUCCGCUCa--GUAGCgaaCGGGCUg -5'
33164 3' -57.3 NC_007497.1 + 12242 0.73 0.17746
Target:  5'- cGCAGGUGGauacagcucGUCGUCGCUU-CUCGGCg -3'
miRNA:   3'- aCGUCCGCU---------CAGUAGCGAAcGGGCUG- -5'
33164 3' -57.3 NC_007497.1 + 35418 1.1 0.000359
Target:  5'- cUGCAGGCGAGUCAUCGCUUGCCCGACg -3'
miRNA:   3'- -ACGUCCGCUCAGUAGCGAACGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.