Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33164 | 5' | -52 | NC_007497.1 | + | 1244 | 0.68 | 0.7079 |
Target: 5'- -cGCCGuACuGCuGCGUCGaGUACgccAGCg -3' miRNA: 3'- aaCGGCuUGuUG-CGCAGC-CAUGa--UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 1968 | 0.69 | 0.63953 |
Target: 5'- -cGCCGcaucGCGGCgGCGUCGGgGC-AGCg -3' miRNA: 3'- aaCGGCu---UGUUG-CGCAGCCaUGaUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 4557 | 0.66 | 0.823637 |
Target: 5'- cUGCCGAcgucCGACGCGUUGGcGaaGGUc -3' miRNA: 3'- aACGGCUu---GUUGCGCAGCCaUgaUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 5136 | 0.66 | 0.817863 |
Target: 5'- -aGCCGAACGGgcugcuuacguacauCGCGggCGGUGCcaauGCc -3' miRNA: 3'- aaCGGCUUGUU---------------GCGCa-GCCAUGau--CG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 6804 | 0.67 | 0.762758 |
Target: 5'- -cGCCaAACAACGCGUUc-UAUUGGCg -3' miRNA: 3'- aaCGGcUUGUUGCGCAGccAUGAUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 6876 | 0.67 | 0.773343 |
Target: 5'- -gGCCGGcguuCGACGCGUCGaucGCUcaGGCc -3' miRNA: 3'- aaCGGCUu---GUUGCGCAGCca-UGA--UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 7058 | 0.67 | 0.773343 |
Target: 5'- aUUGCCucgGGACGGCGCauagcUCaGUGCUGGUa -3' miRNA: 3'- -AACGG---CUUGUUGCGc----AGcCAUGAUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 7177 | 0.81 | 0.140844 |
Target: 5'- -aGCCGAGCAACGCGaagaUCaGGUGCgccgGGCa -3' miRNA: 3'- aaCGGCUUGUUGCGC----AG-CCAUGa---UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 8350 | 0.69 | 0.673909 |
Target: 5'- cUUGCCGAGCuGCGCGcgcagaugUCGGcUGCcgAGUu -3' miRNA: 3'- -AACGGCUUGuUGCGC--------AGCC-AUGa-UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 8417 | 0.66 | 0.804096 |
Target: 5'- -cGCCGAuCAGCGaGgagCGGUACgacuuGCa -3' miRNA: 3'- aaCGGCUuGUUGCgCa--GCCAUGau---CG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 8667 | 0.66 | 0.804096 |
Target: 5'- -cGaCCGGAgGAUGCGU-GG-GCUGGCg -3' miRNA: 3'- aaC-GGCUUgUUGCGCAgCCaUGAUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 8983 | 0.66 | 0.81397 |
Target: 5'- -aGCCGcuCGACGCGacggCGGaGCUguaucAGCg -3' miRNA: 3'- aaCGGCuuGUUGCGCa---GCCaUGA-----UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 9142 | 0.66 | 0.804096 |
Target: 5'- -aGCuCGGGCAAgcauuCGCGUCGGgccaguUGCgcgGGCa -3' miRNA: 3'- aaCG-GCUUGUU-----GCGCAGCC------AUGa--UCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 9644 | 0.66 | 0.833084 |
Target: 5'- -cGCCG-GCcGCGaCGUCGG--CUGGCu -3' miRNA: 3'- aaCGGCuUGuUGC-GCAGCCauGAUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 10957 | 0.69 | 0.63953 |
Target: 5'- -cGCCcAGCAACGCG-CGGaaUACaGGCg -3' miRNA: 3'- aaCGGcUUGUUGCGCaGCC--AUGaUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 11703 | 0.66 | 0.80807 |
Target: 5'- -cGCCGAGCuggccgacuACGCGUCcgagcgucagcgagaGGUcgcgcgagaGCUGGCc -3' miRNA: 3'- aaCGGCUUGu--------UGCGCAG---------------CCA---------UGAUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 12314 | 0.69 | 0.63953 |
Target: 5'- -cGCCGGcgGCAACGCGUaCGGguuccauCUuGCg -3' miRNA: 3'- aaCGGCU--UGUUGCGCA-GCCau-----GAuCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 12525 | 0.69 | 0.651013 |
Target: 5'- cUUGuuGGcgGCAGCgGUGcUGGUGCUGGCg -3' miRNA: 3'- -AACggCU--UGUUG-CGCaGCCAUGAUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 14073 | 0.69 | 0.63953 |
Target: 5'- -aGCUG-ACAGCGCGUCGuGUcGC-GGCg -3' miRNA: 3'- aaCGGCuUGUUGCGCAGC-CA-UGaUCG- -5' |
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33164 | 5' | -52 | NC_007497.1 | + | 16067 | 0.69 | 0.63953 |
Target: 5'- aUGCgCGAAUGGCGCGggCGcGU-CUGGCu -3' miRNA: 3'- aACG-GCUUGUUGCGCa-GC-CAuGAUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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