miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33164 5' -52 NC_007497.1 + 35457 1.1 0.001236
Target:  5'- cUUGCCGAACAACGCGUCGGUACUAGCg -3'
miRNA:   3'- -AACGGCUUGUUGCGCAGCCAUGAUCG- -5'
33164 5' -52 NC_007497.1 + 9644 0.66 0.833084
Target:  5'- -cGCCG-GCcGCGaCGUCGG--CUGGCu -3'
miRNA:   3'- aaCGGCuUGuUGC-GCAGCCauGAUCG- -5'
33164 5' -52 NC_007497.1 + 28201 0.66 0.823637
Target:  5'- -cGCCGGACGACGgGUCacucuucUGC-AGCg -3'
miRNA:   3'- aaCGGCUUGUUGCgCAGcc-----AUGaUCG- -5'
33164 5' -52 NC_007497.1 + 28503 0.66 0.81397
Target:  5'- aUGUCGAGCAccuucGCGCGcgCGGUcgaauggagGCUguccGGCg -3'
miRNA:   3'- aACGGCUUGU-----UGCGCa-GCCA---------UGA----UCG- -5'
33164 5' -52 NC_007497.1 + 34783 0.66 0.794025
Target:  5'- -gGCCuccaacGCGACGCGUCGcUGCUGcGCc -3'
miRNA:   3'- aaCGGcu----UGUUGCGCAGCcAUGAU-CG- -5'
33164 5' -52 NC_007497.1 + 7058 0.67 0.773343
Target:  5'- aUUGCCucgGGACGGCGCauagcUCaGUGCUGGUa -3'
miRNA:   3'- -AACGG---CUUGUUGCGc----AGcCAUGAUCG- -5'
33164 5' -52 NC_007497.1 + 39839 0.67 0.752026
Target:  5'- -gGCUgGAACGuagcCGCGUUGGUcugcggacGCUGGCu -3'
miRNA:   3'- aaCGG-CUUGUu---GCGCAGCCA--------UGAUCG- -5'
33164 5' -52 NC_007497.1 + 43336 0.68 0.730177
Target:  5'- aUGCCGAucuCGACGUugaGGUGCUucGCg -3'
miRNA:   3'- aACGGCUu--GUUGCGcagCCAUGAu-CG- -5'
33164 5' -52 NC_007497.1 + 1244 0.68 0.7079
Target:  5'- -cGCCGuACuGCuGCGUCGaGUACgccAGCg -3'
miRNA:   3'- aaCGGCuUGuUG-CGCAGC-CAUGa--UCG- -5'
33164 5' -52 NC_007497.1 + 16067 0.69 0.63953
Target:  5'- aUGCgCGAAUGGCGCGggCGcGU-CUGGCu -3'
miRNA:   3'- aACG-GCUUGUUGCGCa-GC-CAuGAUCG- -5'
33164 5' -52 NC_007497.1 + 40221 0.7 0.559551
Target:  5'- cUUGUCGAccuucgcCAACGCGUCGG-ACgucGGCa -3'
miRNA:   3'- -AACGGCUu------GUUGCGCAGCCaUGa--UCG- -5'
33164 5' -52 NC_007497.1 + 35572 0.71 0.537129
Target:  5'- aUGCCGcgcGCGAuCGCGUCGGccACgccgGGCa -3'
miRNA:   3'- aACGGCu--UGUU-GCGCAGCCa-UGa---UCG- -5'
33164 5' -52 NC_007497.1 + 7177 0.81 0.140844
Target:  5'- -aGCCGAGCAACGCGaagaUCaGGUGCgccgGGCa -3'
miRNA:   3'- aaCGGCUUGUUGCGC----AG-CCAUGa---UCG- -5'
33164 5' -52 NC_007497.1 + 27038 0.69 0.63953
Target:  5'- -cGCCGAAUu-CGCGcuucccaacgauUCGGUACU-GCa -3'
miRNA:   3'- aaCGGCUUGuuGCGC------------AGCCAUGAuCG- -5'
33164 5' -52 NC_007497.1 + 12314 0.69 0.63953
Target:  5'- -cGCCGGcgGCAACGCGUaCGGguuccauCUuGCg -3'
miRNA:   3'- aaCGGCU--UGUUGCGCA-GCCau-----GAuCG- -5'
33164 5' -52 NC_007497.1 + 1968 0.69 0.63953
Target:  5'- -cGCCGcaucGCGGCgGCGUCGGgGC-AGCg -3'
miRNA:   3'- aaCGGCu---UGUUG-CGCAGCCaUGaUCG- -5'
33164 5' -52 NC_007497.1 + 14073 0.69 0.63953
Target:  5'- -aGCUG-ACAGCGCGUCGuGUcGC-GGCg -3'
miRNA:   3'- aaCGGCuUGUUGCGCAGC-CA-UGaUCG- -5'
33164 5' -52 NC_007497.1 + 10957 0.69 0.63953
Target:  5'- -cGCCcAGCAACGCG-CGGaaUACaGGCg -3'
miRNA:   3'- aaCGGcUUGUUGCGCaGCC--AUGaUCG- -5'
33164 5' -52 NC_007497.1 + 40720 0.71 0.526033
Target:  5'- -cGCgCGAGCucauCGCGgCGGUACgcgAGCg -3'
miRNA:   3'- aaCG-GCUUGuu--GCGCaGCCAUGa--UCG- -5'
33164 5' -52 NC_007497.1 + 41467 0.66 0.836799
Target:  5'- -cGCCGAugGACGgCGaucagaaaacggaucUCGGUAUcgccuacuacaUGGCg -3'
miRNA:   3'- aaCGGCUugUUGC-GC---------------AGCCAUG-----------AUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.