Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33165 | 3' | -58.6 | NC_007497.1 | + | 35586 | 1.1 | 0.000295 |
Target: 5'- cGCGUCGGCCACGCCGGGCAAUUCCUCc -3' miRNA: 3'- -CGCAGCCGGUGCGGCCCGUUAAGGAG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 15416 | 0.79 | 0.066477 |
Target: 5'- aCGUCGGCCGCGacguggcgcucgaaCCGGGCGAcgUCCUg -3' miRNA: 3'- cGCAGCCGGUGC--------------GGCCCGUUa-AGGAg -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 9158 | 0.76 | 0.114816 |
Target: 5'- cGCGUCgGGCCAguUGCgCGGGCAGgaCCUUa -3' miRNA: 3'- -CGCAG-CCGGU--GCG-GCCCGUUaaGGAG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 4198 | 0.75 | 0.128316 |
Target: 5'- aGCGUCgauGGCgCGCGCCGGGU-AUUCC-Cg -3' miRNA: 3'- -CGCAG---CCG-GUGCGGCCCGuUAAGGaG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 43814 | 0.74 | 0.139389 |
Target: 5'- uGCGUCGGCCGCGUacugcuCGGGCuucagCCa- -3' miRNA: 3'- -CGCAGCCGGUGCG------GCCCGuuaa-GGag -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 9945 | 0.72 | 0.220096 |
Target: 5'- cGCGagaccgCGGCCGCGCaGGGCGAg--CUCg -3' miRNA: 3'- -CGCa-----GCCGGUGCGgCCCGUUaagGAG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 12344 | 0.71 | 0.231859 |
Target: 5'- uGCGaccggCGGCCACgucacgggGCCGGGCAcgUCgaCg -3' miRNA: 3'- -CGCa----GCCGGUG--------CGGCCCGUuaAGgaG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 35469 | 0.71 | 0.244148 |
Target: 5'- cGCGUCGGUacuaGCGCCG-GCA-UUCCg- -3' miRNA: 3'- -CGCAGCCGg---UGCGGCcCGUuAAGGag -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 27585 | 0.7 | 0.256972 |
Target: 5'- cGCGggCGGCUGCGgggCGGccGCGAUUCCUCu -3' miRNA: 3'- -CGCa-GCCGGUGCg--GCC--CGUUAAGGAG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 35691 | 0.7 | 0.263589 |
Target: 5'- uGUGUCGGCCgauACGCCGGaCAGcgCCa- -3' miRNA: 3'- -CGCAGCCGG---UGCGGCCcGUUaaGGag -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 16207 | 0.7 | 0.263589 |
Target: 5'- cGUGUgGGCCGcCGCCGaGGCuGUgugCUUCg -3' miRNA: 3'- -CGCAgCCGGU-GCGGC-CCGuUAa--GGAG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 23225 | 0.69 | 0.337446 |
Target: 5'- gGCGUC-GCCGgcUGCCGGGC--UUCCg- -3' miRNA: 3'- -CGCAGcCGGU--GCGGCCCGuuAAGGag -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 38125 | 0.69 | 0.337446 |
Target: 5'- cGCGagUGGauuagaaaCGCGCCGGGCAGgcCUUCg -3' miRNA: 3'- -CGCa-GCCg-------GUGCGGCCCGUUaaGGAG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 12300 | 0.68 | 0.362356 |
Target: 5'- gGCGUcgCGGCCGcCGCCGgcGGCAacgcguacggGUUCCa- -3' miRNA: 3'- -CGCA--GCCGGU-GCGGC--CCGU----------UAAGGag -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 2250 | 0.68 | 0.388515 |
Target: 5'- --cUCGGCCACgGUCGGGCg---CUUCg -3' miRNA: 3'- cgcAGCCGGUG-CGGCCCGuuaaGGAG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 9509 | 0.67 | 0.397506 |
Target: 5'- uGCGUC-GCUugcaGCCGGGCGGcUCgUCa -3' miRNA: 3'- -CGCAGcCGGug--CGGCCCGUUaAGgAG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 11988 | 0.67 | 0.406629 |
Target: 5'- cGUGUUGGCgCGaGCCGGGCGc-UCgCUCu -3' miRNA: 3'- -CGCAGCCG-GUgCGGCCCGUuaAG-GAG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 29944 | 0.67 | 0.406629 |
Target: 5'- --uUCGGCCAUGuuGGGCGAUg---- -3' miRNA: 3'- cgcAGCCGGUGCggCCCGUUAaggag -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 33915 | 0.67 | 0.425265 |
Target: 5'- uCGgCGGCCAUGCCGccGCGAagaaguuguuUUCCUCc -3' miRNA: 3'- cGCaGCCGGUGCGGCc-CGUU----------AAGGAG- -5' |
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33165 | 3' | -58.6 | NC_007497.1 | + | 27582 | 0.67 | 0.4444 |
Target: 5'- cGCGUCGGCCGcCGaCUGGaucacGCAGUUgCa- -3' miRNA: 3'- -CGCAGCCGGU-GC-GGCC-----CGUUAAgGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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