miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33165 3' -58.6 NC_007497.1 + 35586 1.1 0.000295
Target:  5'- cGCGUCGGCCACGCCGGGCAAUUCCUCc -3'
miRNA:   3'- -CGCAGCCGGUGCGGCCCGUUAAGGAG- -5'
33165 3' -58.6 NC_007497.1 + 3374 0.66 0.49424
Target:  5'- cCGUgCGGCgCacuGCGCgCGGGCGAUaugCCUUg -3'
miRNA:   3'- cGCA-GCCG-G---UGCG-GCCCGUUAa--GGAG- -5'
33165 3' -58.6 NC_007497.1 + 20877 0.66 0.473981
Target:  5'- aCGUCaGCaACGCCGGGaacuAUUCCg- -3'
miRNA:   3'- cGCAGcCGgUGCGGCCCgu--UAAGGag -5'
33165 3' -58.6 NC_007497.1 + 27582 0.67 0.4444
Target:  5'- cGCGUCGGCCGcCGaCUGGaucacGCAGUUgCa- -3'
miRNA:   3'- -CGCAGCCGGU-GC-GGCC-----CGUUAAgGag -5'
33165 3' -58.6 NC_007497.1 + 33915 0.67 0.425265
Target:  5'- uCGgCGGCCAUGCCGccGCGAagaaguuguuUUCCUCc -3'
miRNA:   3'- cGCaGCCGGUGCGGCc-CGUU----------AAGGAG- -5'
33165 3' -58.6 NC_007497.1 + 2250 0.68 0.388515
Target:  5'- --cUCGGCCACgGUCGGGCg---CUUCg -3'
miRNA:   3'- cgcAGCCGGUG-CGGCCCGuuaaGGAG- -5'
33165 3' -58.6 NC_007497.1 + 23225 0.69 0.337446
Target:  5'- gGCGUC-GCCGgcUGCCGGGC--UUCCg- -3'
miRNA:   3'- -CGCAGcCGGU--GCGGCCCGuuAAGGag -5'
33165 3' -58.6 NC_007497.1 + 16207 0.7 0.263589
Target:  5'- cGUGUgGGCCGcCGCCGaGGCuGUgugCUUCg -3'
miRNA:   3'- -CGCAgCCGGU-GCGGC-CCGuUAa--GGAG- -5'
33165 3' -58.6 NC_007497.1 + 35691 0.7 0.263589
Target:  5'- uGUGUCGGCCgauACGCCGGaCAGcgCCa- -3'
miRNA:   3'- -CGCAGCCGG---UGCGGCCcGUUaaGGag -5'
33165 3' -58.6 NC_007497.1 + 35469 0.71 0.244148
Target:  5'- cGCGUCGGUacuaGCGCCG-GCA-UUCCg- -3'
miRNA:   3'- -CGCAGCCGg---UGCGGCcCGUuAAGGag -5'
33165 3' -58.6 NC_007497.1 + 9509 0.67 0.397506
Target:  5'- uGCGUC-GCUugcaGCCGGGCGGcUCgUCa -3'
miRNA:   3'- -CGCAGcCGGug--CGGCCCGUUaAGgAG- -5'
33165 3' -58.6 NC_007497.1 + 12300 0.68 0.362356
Target:  5'- gGCGUcgCGGCCGcCGCCGgcGGCAacgcguacggGUUCCa- -3'
miRNA:   3'- -CGCA--GCCGGU-GCGGC--CCGU----------UAAGGag -5'
33165 3' -58.6 NC_007497.1 + 38125 0.69 0.337446
Target:  5'- cGCGagUGGauuagaaaCGCGCCGGGCAGgcCUUCg -3'
miRNA:   3'- -CGCa-GCCg-------GUGCGGCCCGUUaaGGAG- -5'
33165 3' -58.6 NC_007497.1 + 27585 0.7 0.256972
Target:  5'- cGCGggCGGCUGCGgggCGGccGCGAUUCCUCu -3'
miRNA:   3'- -CGCa-GCCGGUGCg--GCC--CGUUAAGGAG- -5'
33165 3' -58.6 NC_007497.1 + 12344 0.71 0.231859
Target:  5'- uGCGaccggCGGCCACgucacgggGCCGGGCAcgUCgaCg -3'
miRNA:   3'- -CGCa----GCCGGUG--------CGGCCCGUuaAGgaG- -5'
33165 3' -58.6 NC_007497.1 + 9945 0.72 0.220096
Target:  5'- cGCGagaccgCGGCCGCGCaGGGCGAg--CUCg -3'
miRNA:   3'- -CGCa-----GCCGGUGCGgCCCGUUaagGAG- -5'
33165 3' -58.6 NC_007497.1 + 43814 0.74 0.139389
Target:  5'- uGCGUCGGCCGCGUacugcuCGGGCuucagCCa- -3'
miRNA:   3'- -CGCAGCCGGUGCG------GCCCGuuaa-GGag -5'
33165 3' -58.6 NC_007497.1 + 4198 0.75 0.128316
Target:  5'- aGCGUCgauGGCgCGCGCCGGGU-AUUCC-Cg -3'
miRNA:   3'- -CGCAG---CCG-GUGCGGCCCGuUAAGGaG- -5'
33165 3' -58.6 NC_007497.1 + 9158 0.76 0.114816
Target:  5'- cGCGUCgGGCCAguUGCgCGGGCAGgaCCUUa -3'
miRNA:   3'- -CGCAG-CCGGU--GCG-GCCCGUUaaGGAG- -5'
33165 3' -58.6 NC_007497.1 + 19590 0.66 0.504517
Target:  5'- aGUGUCGccGCCgauAUGUCGGGCGGUgagCCg- -3'
miRNA:   3'- -CGCAGC--CGG---UGCGGCCCGUUAa--GGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.