Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33166 | 3' | -56.2 | NC_007497.1 | + | 114 | 0.67 | 0.593818 |
Target: 5'- aCGCGGCcaUCGCGgcaggcuacagccCCGCGAcAGCa -3' miRNA: 3'- gGCGCCGaaGGCGCaua----------GGCGCU-UCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 32515 | 0.67 | 0.581862 |
Target: 5'- uCCGacaGGCcgcCCGCcaGUCCGCcgaGAAGCg -3' miRNA: 3'- -GGCg--CCGaa-GGCGcaUAGGCG---CUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 40126 | 0.67 | 0.581862 |
Target: 5'- -aGCGGCUUCaCGcCGUucgcgcccAUCUGCGcuGCc -3' miRNA: 3'- ggCGCCGAAG-GC-GCA--------UAGGCGCuuCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 17202 | 0.67 | 0.571037 |
Target: 5'- aUCGCGGCcgccCCGCagccgcCCGCGcAGGCa -3' miRNA: 3'- -GGCGCCGaa--GGCGcaua--GGCGC-UUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 26309 | 0.67 | 0.549541 |
Target: 5'- uUCGUGGCgucgUCGCGgcUCgGCGuccGGCu -3' miRNA: 3'- -GGCGCCGaa--GGCGCauAGgCGCu--UCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 12423 | 0.67 | 0.549541 |
Target: 5'- gUCGUcaaGGCUUCUGCG-GUUCG-GAAGCc -3' miRNA: 3'- -GGCG---CCGAAGGCGCaUAGGCgCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 4575 | 0.67 | 0.549541 |
Target: 5'- gCCGCGuCUUgCGuCG-AUCCGCcGAGCa -3' miRNA: 3'- -GGCGCcGAAgGC-GCaUAGGCGcUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 31137 | 0.68 | 0.538886 |
Target: 5'- cCUGCGGCgucccCUGCGgc-CCGUGcGGCg -3' miRNA: 3'- -GGCGCCGaa---GGCGCauaGGCGCuUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 31071 | 0.68 | 0.538886 |
Target: 5'- cCUGCGGCgucccCUGCGgc-CCGUGcGGCg -3' miRNA: 3'- -GGCGCCGaa---GGCGCauaGGCGCuUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 7992 | 0.68 | 0.537824 |
Target: 5'- aCCGCgcguucuGGCUcgaUCCGC---UgCGCGAGGCg -3' miRNA: 3'- -GGCG-------CCGA---AGGCGcauAgGCGCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 851 | 0.68 | 0.529357 |
Target: 5'- aCCGCGGCguucugcuugcugaCCGUGUucacGUgCGCGucGCa -3' miRNA: 3'- -GGCGCCGaa------------GGCGCA----UAgGCGCuuCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 26200 | 0.68 | 0.528302 |
Target: 5'- cCCGaC-GUUUCCGgaCGUGUCCaCGAGGCg -3' miRNA: 3'- -GGC-GcCGAAGGC--GCAUAGGcGCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 35041 | 0.68 | 0.528302 |
Target: 5'- aUCGCgaGGCUUUCGCGcAUCgCGCGcauGCc -3' miRNA: 3'- -GGCG--CCGAAGGCGCaUAG-GCGCuu-CG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 9090 | 0.68 | 0.517796 |
Target: 5'- gCgGUGGCgcugUCCgGCGUAUCgGcCGAcacAGCg -3' miRNA: 3'- -GgCGCCGa---AGG-CGCAUAGgC-GCU---UCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 32358 | 0.68 | 0.517796 |
Target: 5'- gCCG-GGCUUCCGaa---CCGCaGAAGCc -3' miRNA: 3'- -GGCgCCGAAGGCgcauaGGCG-CUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 25779 | 0.68 | 0.507375 |
Target: 5'- -aGCGGCUUCgagaGCGg---CGCGAAGUu -3' miRNA: 3'- ggCGCCGAAGg---CGCauagGCGCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 44438 | 0.68 | 0.507375 |
Target: 5'- gCUGCGGg--CUGCccAUCuCGCGAAGCa -3' miRNA: 3'- -GGCGCCgaaGGCGcaUAG-GCGCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 37456 | 0.68 | 0.507375 |
Target: 5'- aCC-CGGCUcggaaccagccUCUGCGUcaAUCUGCGAcuugagGGCg -3' miRNA: 3'- -GGcGCCGA-----------AGGCGCA--UAGGCGCU------UCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 44302 | 0.68 | 0.497043 |
Target: 5'- gCCGuUGGCgaucaaCCGCGgcgGUgCCGCcGGAGCa -3' miRNA: 3'- -GGC-GCCGaa----GGCGCa--UA-GGCG-CUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 23154 | 0.69 | 0.486808 |
Target: 5'- aCGaCGauCUUCCGgaaCGUGUCCGCGAcgAGCu -3' miRNA: 3'- gGC-GCc-GAAGGC---GCAUAGGCGCU--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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