miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33166 3' -56.2 NC_007497.1 + 15242 0.74 0.247245
Target:  5'- cCUGUGGCgcaucCCGCGgacgccggccgagcgCCGCGAGGCg -3'
miRNA:   3'- -GGCGCCGaa---GGCGCaua------------GGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 15743 0.71 0.339281
Target:  5'- gCCG-GGCUUCCGCaaauuUCUGCucGAGGCg -3'
miRNA:   3'- -GGCgCCGAAGGCGcau--AGGCG--CUUCG- -5'
33166 3' -56.2 NC_007497.1 + 16559 0.66 0.636438
Target:  5'- uCCGUauucGCUUCgGCGUGcCUGCGcuGCa -3'
miRNA:   3'- -GGCGc---CGAAGgCGCAUaGGCGCuuCG- -5'
33166 3' -56.2 NC_007497.1 + 16674 0.66 0.625493
Target:  5'- -aGCGcGCcgCuCGCGUGaCCGCGucGCg -3'
miRNA:   3'- ggCGC-CGaaG-GCGCAUaGGCGCuuCG- -5'
33166 3' -56.2 NC_007497.1 + 17202 0.67 0.571037
Target:  5'- aUCGCGGCcgccCCGCagccgcCCGCGcAGGCa -3'
miRNA:   3'- -GGCGCCGaa--GGCGcaua--GGCGC-UUCG- -5'
33166 3' -56.2 NC_007497.1 + 18486 0.7 0.385323
Target:  5'- gCCGCGacgacGCcacgaaguuuucggaUUUCGCGUAUCCGC-AGGCg -3'
miRNA:   3'- -GGCGC-----CG---------------AAGGCGCAUAGGCGcUUCG- -5'
33166 3' -56.2 NC_007497.1 + 23154 0.69 0.486808
Target:  5'- aCGaCGauCUUCCGgaaCGUGUCCGCGAcgAGCu -3'
miRNA:   3'- gGC-GCc-GAAGGC---GCAUAGGCGCU--UCG- -5'
33166 3' -56.2 NC_007497.1 + 23450 0.66 0.636438
Target:  5'- -aGCGGCggCCGCcuucaUGUCgGCGAucucGCg -3'
miRNA:   3'- ggCGCCGaaGGCGc----AUAGgCGCUu---CG- -5'
33166 3' -56.2 NC_007497.1 + 25779 0.68 0.507375
Target:  5'- -aGCGGCUUCgagaGCGg---CGCGAAGUu -3'
miRNA:   3'- ggCGCCGAAGg---CGCauagGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 25983 0.71 0.355016
Target:  5'- uCgGCGGCUuccaccacaaaUCCacugccgGCGUAUCUGCGcAGCu -3'
miRNA:   3'- -GgCGCCGA-----------AGG-------CGCAUAGGCGCuUCG- -5'
33166 3' -56.2 NC_007497.1 + 26027 0.73 0.28574
Target:  5'- cCCGCGuacuCUUCCGCGUcgCCGgccaucgGAGGCg -3'
miRNA:   3'- -GGCGCc---GAAGGCGCAuaGGCg------CUUCG- -5'
33166 3' -56.2 NC_007497.1 + 26200 0.68 0.528302
Target:  5'- cCCGaC-GUUUCCGgaCGUGUCCaCGAGGCg -3'
miRNA:   3'- -GGC-GcCGAAGGC--GCAUAGGcGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 26309 0.67 0.549541
Target:  5'- uUCGUGGCgucgUCGCGgcUCgGCGuccGGCu -3'
miRNA:   3'- -GGCGCCGaa--GGCGCauAGgCGCu--UCG- -5'
33166 3' -56.2 NC_007497.1 + 28418 0.66 0.614554
Target:  5'- gCCGuCGGCaUUCUggaucgGCGUA-CCGuCGAGGUa -3'
miRNA:   3'- -GGC-GCCG-AAGG------CGCAUaGGC-GCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 29532 0.69 0.476673
Target:  5'- cUCGCGGCgcucggCCG-GcGUCCGCGGgauGCg -3'
miRNA:   3'- -GGCGCCGaa----GGCgCaUAGGCGCUu--CG- -5'
33166 3' -56.2 NC_007497.1 + 29989 0.66 0.636438
Target:  5'- gCCGCGGUcauuugCCGCcgagcaGUCgGCGAcgAGCa -3'
miRNA:   3'- -GGCGCCGaa----GGCGca----UAGgCGCU--UCG- -5'
33166 3' -56.2 NC_007497.1 + 30916 0.69 0.456725
Target:  5'- cCUGCGGCggCCcauGCGgcGUCCGUGcGGCc -3'
miRNA:   3'- -GGCGCCGaaGG---CGCa-UAGGCGCuUCG- -5'
33166 3' -56.2 NC_007497.1 + 31071 0.68 0.538886
Target:  5'- cCUGCGGCgucccCUGCGgc-CCGUGcGGCg -3'
miRNA:   3'- -GGCGCCGaa---GGCGCauaGGCGCuUCG- -5'
33166 3' -56.2 NC_007497.1 + 31137 0.68 0.538886
Target:  5'- cCUGCGGCgucccCUGCGgc-CCGUGcGGCg -3'
miRNA:   3'- -GGCGCCGaa---GGCGCauaGGCGCuUCG- -5'
33166 3' -56.2 NC_007497.1 + 31577 0.67 0.60363
Target:  5'- gUGCcGCUUCCGC-UcgCCGCGAugauGUa -3'
miRNA:   3'- gGCGcCGAAGGCGcAuaGGCGCUu---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.