miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33166 3' -56.2 NC_007497.1 + 114 0.67 0.593818
Target:  5'- aCGCGGCcaUCGCGgcaggcuacagccCCGCGAcAGCa -3'
miRNA:   3'- gGCGCCGaaGGCGCaua----------GGCGCU-UCG- -5'
33166 3' -56.2 NC_007497.1 + 851 0.68 0.529357
Target:  5'- aCCGCGGCguucugcuugcugaCCGUGUucacGUgCGCGucGCa -3'
miRNA:   3'- -GGCGCCGaa------------GGCGCA----UAgGCGCuuCG- -5'
33166 3' -56.2 NC_007497.1 + 2551 0.66 0.625493
Target:  5'- gCGcCGGCggCCGCGgcgcAUCCuuGCGAuuuccgAGCg -3'
miRNA:   3'- gGC-GCCGaaGGCGCa---UAGG--CGCU------UCG- -5'
33166 3' -56.2 NC_007497.1 + 4048 0.66 0.669211
Target:  5'- gCCGCGuccccgaaccGCU--CGCGUAccgCCGCGAugAGCu -3'
miRNA:   3'- -GGCGC----------CGAagGCGCAUa--GGCGCU--UCG- -5'
33166 3' -56.2 NC_007497.1 + 4411 0.69 0.437234
Target:  5'- gCC-CGGUUggCGCuguUCCGCGAGGCa -3'
miRNA:   3'- -GGcGCCGAagGCGcauAGGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 4575 0.67 0.549541
Target:  5'- gCCGCGuCUUgCGuCG-AUCCGCcGAGCa -3'
miRNA:   3'- -GGCGCcGAAgGC-GCaUAGGCGcUUCG- -5'
33166 3' -56.2 NC_007497.1 + 4905 0.67 0.60363
Target:  5'- -gGCGGCacgacgaGCGgcuggGUCgGCGAAGCa -3'
miRNA:   3'- ggCGCCGaagg---CGCa----UAGgCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 5159 0.66 0.625493
Target:  5'- aUCGCGGg--CgGUGccaaugCCGCGAAGCa -3'
miRNA:   3'- -GGCGCCgaaGgCGCaua---GGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 5517 0.67 0.602538
Target:  5'- uUCGCGuGCUg-CGCG-AUCCguacacgGCGAAGCc -3'
miRNA:   3'- -GGCGC-CGAagGCGCaUAGG-------CGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 7992 0.68 0.537824
Target:  5'- aCCGCgcguucuGGCUcgaUCCGC---UgCGCGAGGCg -3'
miRNA:   3'- -GGCG-------CCGA---AGGCGcauAgGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 8825 0.73 0.28574
Target:  5'- aCGCGGaagCCGCGg--CCGCGGcguucGGCa -3'
miRNA:   3'- gGCGCCgaaGGCGCauaGGCGCU-----UCG- -5'
33166 3' -56.2 NC_007497.1 + 9090 0.68 0.517796
Target:  5'- gCgGUGGCgcugUCCgGCGUAUCgGcCGAcacAGCg -3'
miRNA:   3'- -GgCGCCGa---AGG-CGCAUAGgC-GCU---UCG- -5'
33166 3' -56.2 NC_007497.1 + 9214 0.67 0.60363
Target:  5'- gCGUGGCcgaCGCG-AUCgCGCGcGGCa -3'
miRNA:   3'- gGCGCCGaagGCGCaUAG-GCGCuUCG- -5'
33166 3' -56.2 NC_007497.1 + 9939 0.69 0.44692
Target:  5'- aUCGCGcGCgagaCCGCGg--CCGCGcaGGGCg -3'
miRNA:   3'- -GGCGC-CGaa--GGCGCauaGGCGC--UUCG- -5'
33166 3' -56.2 NC_007497.1 + 10163 0.7 0.399736
Target:  5'- aCCGCGGCgaCCGCcGgcuuggCCGCagcaacGGAGCg -3'
miRNA:   3'- -GGCGCCGaaGGCG-Caua---GGCG------CUUCG- -5'
33166 3' -56.2 NC_007497.1 + 11011 0.7 0.381774
Target:  5'- gCGCGGCaggCCGgGUugaUUGCGggGCg -3'
miRNA:   3'- gGCGCCGaa-GGCgCAua-GGCGCuuCG- -5'
33166 3' -56.2 NC_007497.1 + 11338 0.66 0.614554
Target:  5'- gCCGCGcaggUCgCGCGUAUCgGCGucaauGCg -3'
miRNA:   3'- -GGCGCcga-AG-GCGCAUAGgCGCuu---CG- -5'
33166 3' -56.2 NC_007497.1 + 11963 0.66 0.644098
Target:  5'- -aGCGGCUcacguugagcgcgaUUgGCGUGUUgGCGcGAGCc -3'
miRNA:   3'- ggCGCCGA--------------AGgCGCAUAGgCGC-UUCG- -5'
33166 3' -56.2 NC_007497.1 + 12423 0.67 0.549541
Target:  5'- gUCGUcaaGGCUUCUGCG-GUUCG-GAAGCc -3'
miRNA:   3'- -GGCG---CCGAAGGCGCaUAGGCgCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 14959 0.67 0.60363
Target:  5'- -aGCGGCgggUgaGUGUAUuuGcCGggGCg -3'
miRNA:   3'- ggCGCCGa--AggCGCAUAggC-GCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.