miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33166 3' -56.2 NC_007497.1 + 2551 0.66 0.625493
Target:  5'- gCGcCGGCggCCGCGgcgcAUCCuuGCGAuuuccgAGCg -3'
miRNA:   3'- gGC-GCCGaaGGCGCa---UAGG--CGCU------UCG- -5'
33166 3' -56.2 NC_007497.1 + 851 0.68 0.529357
Target:  5'- aCCGCGGCguucugcuugcugaCCGUGUucacGUgCGCGucGCa -3'
miRNA:   3'- -GGCGCCGaa------------GGCGCA----UAgGCGCuuCG- -5'
33166 3' -56.2 NC_007497.1 + 26309 0.67 0.549541
Target:  5'- uUCGUGGCgucgUCGCGgcUCgGCGuccGGCu -3'
miRNA:   3'- -GGCGCCGaa--GGCGCauAGgCGCu--UCG- -5'
33166 3' -56.2 NC_007497.1 + 4575 0.67 0.549541
Target:  5'- gCCGCGuCUUgCGuCG-AUCCGCcGAGCa -3'
miRNA:   3'- -GGCGCcGAAgGC-GCaUAGGCGcUUCG- -5'
33166 3' -56.2 NC_007497.1 + 17202 0.67 0.571037
Target:  5'- aUCGCGGCcgccCCGCagccgcCCGCGcAGGCa -3'
miRNA:   3'- -GGCGCCGaa--GGCGcaua--GGCGC-UUCG- -5'
33166 3' -56.2 NC_007497.1 + 40126 0.67 0.581862
Target:  5'- -aGCGGCUUCaCGcCGUucgcgcccAUCUGCGcuGCc -3'
miRNA:   3'- ggCGCCGAAG-GC-GCA--------UAGGCGCuuCG- -5'
33166 3' -56.2 NC_007497.1 + 32515 0.67 0.581862
Target:  5'- uCCGacaGGCcgcCCGCcaGUCCGCcgaGAAGCg -3'
miRNA:   3'- -GGCg--CCGaa-GGCGcaUAGGCG---CUUCG- -5'
33166 3' -56.2 NC_007497.1 + 28418 0.66 0.614554
Target:  5'- gCCGuCGGCaUUCUggaucgGCGUA-CCGuCGAGGUa -3'
miRNA:   3'- -GGC-GCCG-AAGG------CGCAUaGGC-GCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 39477 0.66 0.614554
Target:  5'- uCCGCacCUgacgCUGCGUGUugcgguucaUCGCGAAGCg -3'
miRNA:   3'- -GGCGccGAa---GGCGCAUA---------GGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 26200 0.68 0.528302
Target:  5'- cCCGaC-GUUUCCGgaCGUGUCCaCGAGGCg -3'
miRNA:   3'- -GGC-GcCGAAGGC--GCAUAGGcGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 35041 0.68 0.528302
Target:  5'- aUCGCgaGGCUUUCGCGcAUCgCGCGcauGCc -3'
miRNA:   3'- -GGCG--CCGAAGGCGCaUAG-GCGCuu-CG- -5'
33166 3' -56.2 NC_007497.1 + 32358 0.68 0.517796
Target:  5'- gCCG-GGCUUCCGaa---CCGCaGAAGCc -3'
miRNA:   3'- -GGCgCCGAAGGCgcauaGGCG-CUUCG- -5'
33166 3' -56.2 NC_007497.1 + 39836 0.76 0.183657
Target:  5'- -aGCGGCUggaacguagCCGCGUugGUCUGCGGAcGCu -3'
miRNA:   3'- ggCGCCGAa--------GGCGCA--UAGGCGCUU-CG- -5'
33166 3' -56.2 NC_007497.1 + 35824 0.74 0.221127
Target:  5'- -aGCGGCUgCCGCGUugcuUgCGCGAuGCg -3'
miRNA:   3'- ggCGCCGAaGGCGCAu---AgGCGCUuCG- -5'
33166 3' -56.2 NC_007497.1 + 15242 0.74 0.247245
Target:  5'- cCUGUGGCgcaucCCGCGgacgccggccgagcgCCGCGAGGCg -3'
miRNA:   3'- -GGCGCCGaa---GGCGCaua------------GGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 26027 0.73 0.28574
Target:  5'- cCCGCGuacuCUUCCGCGUcgCCGgccaucgGAGGCg -3'
miRNA:   3'- -GGCGCc---GAAGGCGCAuaGGCg------CUUCG- -5'
33166 3' -56.2 NC_007497.1 + 32633 0.69 0.437234
Target:  5'- gCGCaGCgaaCCGCGcgagAUCCGCGAucauGCu -3'
miRNA:   3'- gGCGcCGaa-GGCGCa---UAGGCGCUu---CG- -5'
33166 3' -56.2 NC_007497.1 + 40089 0.69 0.44692
Target:  5'- gUGCGccuugaauGCUUCCGUGUAUUCGgGAucGCg -3'
miRNA:   3'- gGCGC--------CGAAGGCGCAUAGGCgCUu-CG- -5'
33166 3' -56.2 NC_007497.1 + 34622 0.69 0.466644
Target:  5'- gCUGCGGCcaagCCgGCGgucgCCGCGGuGGCg -3'
miRNA:   3'- -GGCGCCGaa--GG-CGCaua-GGCGCU-UCG- -5'
33166 3' -56.2 NC_007497.1 + 44302 0.68 0.497043
Target:  5'- gCCGuUGGCgaucaaCCGCGgcgGUgCCGCcGGAGCa -3'
miRNA:   3'- -GGC-GCCGaa----GGCGCa--UA-GGCG-CUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.