miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33166 3' -56.2 NC_007497.1 + 35973 1.14 0.000338
Target:  5'- gCCGCGGCUUCCGCGUAUCCGCGAAGCg -3'
miRNA:   3'- -GGCGCCGAAGGCGCAUAGGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 39836 0.76 0.183657
Target:  5'- -aGCGGCUggaacguagCCGCGUugGUCUGCGGAcGCu -3'
miRNA:   3'- ggCGCCGAa--------GGCGCA--UAGGCGCUU-CG- -5'
33166 3' -56.2 NC_007497.1 + 35824 0.74 0.221127
Target:  5'- -aGCGGCUgCCGCGUugcuUgCGCGAuGCg -3'
miRNA:   3'- ggCGCCGAaGGCGCAu---AgGCGCUuCG- -5'
33166 3' -56.2 NC_007497.1 + 15242 0.74 0.247245
Target:  5'- cCUGUGGCgcaucCCGCGgacgccggccgagcgCCGCGAGGCg -3'
miRNA:   3'- -GGCGCCGaa---GGCGCaua------------GGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 8825 0.73 0.28574
Target:  5'- aCGCGGaagCCGCGg--CCGCGGcguucGGCa -3'
miRNA:   3'- gGCGCCgaaGGCGCauaGGCGCU-----UCG- -5'
33166 3' -56.2 NC_007497.1 + 26027 0.73 0.28574
Target:  5'- cCCGCGuacuCUUCCGCGUcgCCGgccaucgGAGGCg -3'
miRNA:   3'- -GGCGCc---GAAGGCGCAuaGGCg------CUUCG- -5'
33166 3' -56.2 NC_007497.1 + 15743 0.71 0.339281
Target:  5'- gCCG-GGCUUCCGCaaauuUCUGCucGAGGCg -3'
miRNA:   3'- -GGCgCCGAAGGCGcau--AGGCG--CUUCG- -5'
33166 3' -56.2 NC_007497.1 + 25983 0.71 0.355016
Target:  5'- uCgGCGGCUuccaccacaaaUCCacugccgGCGUAUCUGCGcAGCu -3'
miRNA:   3'- -GgCGCCGA-----------AGG-------CGCAUAGGCGCuUCG- -5'
33166 3' -56.2 NC_007497.1 + 11011 0.7 0.381774
Target:  5'- gCGCGGCaggCCGgGUugaUUGCGggGCg -3'
miRNA:   3'- gGCGCCGaa-GGCgCAua-GGCGCuuCG- -5'
33166 3' -56.2 NC_007497.1 + 18486 0.7 0.385323
Target:  5'- gCCGCGacgacGCcacgaaguuuucggaUUUCGCGUAUCCGC-AGGCg -3'
miRNA:   3'- -GGCGC-----CG---------------AAGGCGCAUAGGCGcUUCG- -5'
33166 3' -56.2 NC_007497.1 + 10163 0.7 0.399736
Target:  5'- aCCGCGGCgaCCGCcGgcuuggCCGCagcaacGGAGCg -3'
miRNA:   3'- -GGCGCCGaaGGCG-Caua---GGCG------CUUCG- -5'
33166 3' -56.2 NC_007497.1 + 32633 0.69 0.437234
Target:  5'- gCGCaGCgaaCCGCGcgagAUCCGCGAucauGCu -3'
miRNA:   3'- gGCGcCGaa-GGCGCa---UAGGCGCUu---CG- -5'
33166 3' -56.2 NC_007497.1 + 4411 0.69 0.437234
Target:  5'- gCC-CGGUUggCGCuguUCCGCGAGGCa -3'
miRNA:   3'- -GGcGCCGAagGCGcauAGGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 9939 0.69 0.44692
Target:  5'- aUCGCGcGCgagaCCGCGg--CCGCGcaGGGCg -3'
miRNA:   3'- -GGCGC-CGaa--GGCGCauaGGCGC--UUCG- -5'
33166 3' -56.2 NC_007497.1 + 40089 0.69 0.44692
Target:  5'- gUGCGccuugaauGCUUCCGUGUAUUCGgGAucGCg -3'
miRNA:   3'- gGCGC--------CGAAGGCGCAUAGGCgCUu-CG- -5'
33166 3' -56.2 NC_007497.1 + 42586 0.69 0.456725
Target:  5'- gCCGUGGCgagCCGUGcUAUuuGCGcguGCc -3'
miRNA:   3'- -GGCGCCGaa-GGCGC-AUAggCGCuu-CG- -5'
33166 3' -56.2 NC_007497.1 + 30916 0.69 0.456725
Target:  5'- cCUGCGGCggCCcauGCGgcGUCCGUGcGGCc -3'
miRNA:   3'- -GGCGCCGaaGG---CGCa-UAGGCGCuUCG- -5'
33166 3' -56.2 NC_007497.1 + 34622 0.69 0.466644
Target:  5'- gCUGCGGCcaagCCgGCGgucgCCGCGGuGGCg -3'
miRNA:   3'- -GGCGCCGaa--GG-CGCaua-GGCGCU-UCG- -5'
33166 3' -56.2 NC_007497.1 + 29532 0.69 0.476673
Target:  5'- cUCGCGGCgcucggCCG-GcGUCCGCGGgauGCg -3'
miRNA:   3'- -GGCGCCGaa----GGCgCaUAGGCGCUu--CG- -5'
33166 3' -56.2 NC_007497.1 + 23154 0.69 0.486808
Target:  5'- aCGaCGauCUUCCGgaaCGUGUCCGCGAcgAGCu -3'
miRNA:   3'- gGC-GCc-GAAGGC---GCAUAGGCGCU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.