miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33167 5' -54.4 NC_007497.1 + 36097 1.08 0.001112
Target:  5'- cGUUGAAAUAGCCGCCGGCCGUCGACGc -3'
miRNA:   3'- -CAACUUUAUCGGCGGCCGGCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 16336 0.9 0.024558
Target:  5'- uGUUGAAcggAGCgCGCCGGCCGUCGGCGu -3'
miRNA:   3'- -CAACUUua-UCG-GCGGCCGGCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 4977 0.8 0.120817
Target:  5'- -cUGAAA-AGCCGCuggccggugCGGCCGUCGGCGg -3'
miRNA:   3'- caACUUUaUCGGCG---------GCCGGCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 37125 0.77 0.189096
Target:  5'- ------cUGGUCGgCGGCCGUCGACGg -3'
miRNA:   3'- caacuuuAUCGGCgGCCGGCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 32449 0.76 0.205195
Target:  5'- -gUGAcGUGGCCGCCGGUCGcaaGAUGg -3'
miRNA:   3'- caACUuUAUCGGCGGCCGGCag-CUGC- -5'
33167 5' -54.4 NC_007497.1 + 26555 0.75 0.228493
Target:  5'- -gUGAcGUcGCUGCCGGCCGUCaGCGc -3'
miRNA:   3'- caACUuUAuCGGCGGCCGGCAGcUGC- -5'
33167 5' -54.4 NC_007497.1 + 23630 0.73 0.327888
Target:  5'- -------cGGCCGCCGGCCGU-GACc -3'
miRNA:   3'- caacuuuaUCGGCGGCCGGCAgCUGc -5'
33167 5' -54.4 NC_007497.1 + 9639 0.72 0.361608
Target:  5'- -------cGGCgCGCCGGCCG-CGACGu -3'
miRNA:   3'- caacuuuaUCG-GCGGCCGGCaGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 41157 0.72 0.37935
Target:  5'- --cGAAAUcGCCGCCGcaUCGUCGGCGu -3'
miRNA:   3'- caaCUUUAuCGGCGGCc-GGCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 41030 0.72 0.388437
Target:  5'- --aGAAGUcGCCGCCGGgCGaaUUGACGu -3'
miRNA:   3'- caaCUUUAuCGGCGGCCgGC--AGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 23260 0.71 0.407035
Target:  5'- --cGGGAUGGCgGgCGGCUG-CGACGa -3'
miRNA:   3'- caaCUUUAUCGgCgGCCGGCaGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 13626 0.7 0.46602
Target:  5'- --aGAGcgGGCCGCCgcaugGGCCGcCGcACGg -3'
miRNA:   3'- caaCUUuaUCGGCGG-----CCGGCaGC-UGC- -5'
33167 5' -54.4 NC_007497.1 + 39239 0.7 0.47011
Target:  5'- -aUGAAGgucGCCGCCagcgaguaagcgucgGGCCGUCG-CGa -3'
miRNA:   3'- caACUUUau-CGGCGG---------------CCGGCAGCuGC- -5'
33167 5' -54.4 NC_007497.1 + 307 0.7 0.476279
Target:  5'- aUUGGAG-AGCCGCuUGGCaCGaUCGGCGa -3'
miRNA:   3'- cAACUUUaUCGGCG-GCCG-GC-AGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 35275 0.69 0.507703
Target:  5'- -gUGAcg-AGCCGcCCGGCUGcaagCGACGc -3'
miRNA:   3'- caACUuuaUCGGC-GGCCGGCa---GCUGC- -5'
33167 5' -54.4 NC_007497.1 + 28408 0.69 0.539973
Target:  5'- aGUUGAccgAGCCGUCGGCauucuggaUCGGCGu -3'
miRNA:   3'- -CAACUuuaUCGGCGGCCGgc------AGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 18817 0.69 0.550887
Target:  5'- -gUGGA--AGCCGCCGacGCCaUCGACa -3'
miRNA:   3'- caACUUuaUCGGCGGC--CGGcAGCUGc -5'
33167 5' -54.4 NC_007497.1 + 42935 0.68 0.561867
Target:  5'- --cGAgGAUAGCCccgauaCCGGCCGggUCGACGc -3'
miRNA:   3'- caaCU-UUAUCGGc-----GGCCGGC--AGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 29093 0.68 0.583996
Target:  5'- -------cGGCC-UCGGCUGUCGACGa -3'
miRNA:   3'- caacuuuaUCGGcGGCCGGCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 24281 0.68 0.595126
Target:  5'- --aGAAA-AGCCGCCaa-CGUCGGCGg -3'
miRNA:   3'- caaCUUUaUCGGCGGccgGCAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.