Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 36097 | 1.08 | 0.001112 |
Target: 5'- cGUUGAAAUAGCCGCCGGCCGUCGACGc -3' miRNA: 3'- -CAACUUUAUCGGCGGCCGGCAGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 23221 | 0.66 | 0.717474 |
Target: 5'- --cGAGGgcGUCGCCGGCUGcCGGg- -3' miRNA: 3'- caaCUUUauCGGCGGCCGGCaGCUgc -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 34378 | 0.67 | 0.6734 |
Target: 5'- -------gAGCUGCCGGUauuUGUCGAUGa -3' miRNA: 3'- caacuuuaUCGGCGGCCG---GCAGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 23651 | 0.67 | 0.651074 |
Target: 5'- --------uGCgGCCGGCCGUUGuCGg -3' miRNA: 3'- caacuuuauCGgCGGCCGGCAGCuGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 34618 | 0.67 | 0.628676 |
Target: 5'- cGUUGcuGcGGCCaaGCCGGCgGUCGccGCGg -3' miRNA: 3'- -CAACuuUaUCGG--CGGCCGgCAGC--UGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 24281 | 0.68 | 0.595126 |
Target: 5'- --aGAAA-AGCCGCCaa-CGUCGGCGg -3' miRNA: 3'- caaCUUUaUCGGCGGccgGCAGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 29093 | 0.68 | 0.583996 |
Target: 5'- -------cGGCC-UCGGCUGUCGACGa -3' miRNA: 3'- caacuuuaUCGGcGGCCGGCAGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 42935 | 0.68 | 0.561867 |
Target: 5'- --cGAgGAUAGCCccgauaCCGGCCGggUCGACGc -3' miRNA: 3'- caaCU-UUAUCGGc-----GGCCGGC--AGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 18817 | 0.69 | 0.550887 |
Target: 5'- -gUGGA--AGCCGCCGacGCCaUCGACa -3' miRNA: 3'- caACUUuaUCGGCGGC--CGGcAGCUGc -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 28408 | 0.69 | 0.539973 |
Target: 5'- aGUUGAccgAGCCGUCGGCauucuggaUCGGCGu -3' miRNA: 3'- -CAACUuuaUCGGCGGCCGgc------AGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 35275 | 0.69 | 0.507703 |
Target: 5'- -gUGAcg-AGCCGcCCGGCUGcaagCGACGc -3' miRNA: 3'- caACUuuaUCGGC-GGCCGGCa---GCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 32449 | 0.76 | 0.205195 |
Target: 5'- -gUGAcGUGGCCGCCGGUCGcaaGAUGg -3' miRNA: 3'- caACUuUAUCGGCGGCCGGCag-CUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 23630 | 0.73 | 0.327888 |
Target: 5'- -------cGGCCGCCGGCCGU-GACc -3' miRNA: 3'- caacuuuaUCGGCGGCCGGCAgCUGc -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 9639 | 0.72 | 0.361608 |
Target: 5'- -------cGGCgCGCCGGCCG-CGACGu -3' miRNA: 3'- caacuuuaUCG-GCGGCCGGCaGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 41157 | 0.72 | 0.37935 |
Target: 5'- --cGAAAUcGCCGCCGcaUCGUCGGCGu -3' miRNA: 3'- caaCUUUAuCGGCGGCc-GGCAGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 41030 | 0.72 | 0.388437 |
Target: 5'- --aGAAGUcGCCGCCGGgCGaaUUGACGu -3' miRNA: 3'- caaCUUUAuCGGCGGCCgGC--AGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 23260 | 0.71 | 0.407035 |
Target: 5'- --cGGGAUGGCgGgCGGCUG-CGACGa -3' miRNA: 3'- caaCUUUAUCGgCgGCCGGCaGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 13626 | 0.7 | 0.46602 |
Target: 5'- --aGAGcgGGCCGCCgcaugGGCCGcCGcACGg -3' miRNA: 3'- caaCUUuaUCGGCGG-----CCGGCaGC-UGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 14856 | 0.66 | 0.684508 |
Target: 5'- --------uGCCGCCGaGCaGUCGGCGa -3' miRNA: 3'- caacuuuauCGGCGGC-CGgCAGCUGC- -5' |
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33167 | 5' | -54.4 | NC_007497.1 | + | 4977 | 0.8 | 0.120817 |
Target: 5'- -cUGAAA-AGCCGCuggccggugCGGCCGUCGGCGg -3' miRNA: 3'- caACUUUaUCGGCG---------GCCGGCAGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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