miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33168 3' -51.5 NC_007497.1 + 37928 0.66 0.853638
Target:  5'- aACgcCGGCcgCAUGaaUGGCucuGCCUUCa -3'
miRNA:   3'- -UGaaGCCGuaGUACa-GCCGu--UGGAAG- -5'
33168 3' -51.5 NC_007497.1 + 22885 0.66 0.844654
Target:  5'- cCUUCGGguUC--GUUGGCGACUggCg -3'
miRNA:   3'- uGAAGCCguAGuaCAGCCGUUGGaaG- -5'
33168 3' -51.5 NC_007497.1 + 29891 0.66 0.844654
Target:  5'- --cUCGGCGagugCGUGaUCGGCAaucGCCUg- -3'
miRNA:   3'- ugaAGCCGUa---GUAC-AGCCGU---UGGAag -5'
33168 3' -51.5 NC_007497.1 + 15939 0.66 0.835424
Target:  5'- --gUCGGCuUCGUGUUuGaGCAACCgUCg -3'
miRNA:   3'- ugaAGCCGuAGUACAG-C-CGUUGGaAG- -5'
33168 3' -51.5 NC_007497.1 + 15522 0.66 0.825957
Target:  5'- -gUUCGcGCAUCAcaUGUaCGGCcGCCUg- -3'
miRNA:   3'- ugAAGC-CGUAGU--ACA-GCCGuUGGAag -5'
33168 3' -51.5 NC_007497.1 + 1585 0.67 0.796247
Target:  5'- ---cUGGUAUCgAUGgCGGCGGCCUUg -3'
miRNA:   3'- ugaaGCCGUAG-UACaGCCGUUGGAAg -5'
33168 3' -51.5 NC_007497.1 + 3850 0.67 0.775471
Target:  5'- gGCUUgCGGC-----GUCGGCAGCCUcggUCa -3'
miRNA:   3'- -UGAA-GCCGuaguaCAGCCGUUGGA---AG- -5'
33168 3' -51.5 NC_007497.1 + 7720 0.67 0.775471
Target:  5'- ---gCGGCAguaCAccugGUCGGCGGCCgUCg -3'
miRNA:   3'- ugaaGCCGUa--GUa---CAGCCGUUGGaAG- -5'
33168 3' -51.5 NC_007497.1 + 13904 0.67 0.754039
Target:  5'- uACgucgUCGGCGUCGauUGUUGGCGGgCa-- -3'
miRNA:   3'- -UGa---AGCCGUAGU--ACAGCCGUUgGaag -5'
33168 3' -51.5 NC_007497.1 + 29910 0.69 0.686865
Target:  5'- ---cCGGCAUCAgcGUCGGCGGCg--- -3'
miRNA:   3'- ugaaGCCGUAGUa-CAGCCGUUGgaag -5'
33168 3' -51.5 NC_007497.1 + 40229 0.72 0.471831
Target:  5'- cCUUCGccaacGCGUCGgacGUCGGCAgacccGCCUUCa -3'
miRNA:   3'- uGAAGC-----CGUAGUa--CAGCCGU-----UGGAAG- -5'
33168 3' -51.5 NC_007497.1 + 31385 0.74 0.381719
Target:  5'- gAUUUCGGCGUCAUGcCGGaagcggaugUAGCUUUCg -3'
miRNA:   3'- -UGAAGCCGUAGUACaGCC---------GUUGGAAG- -5'
33168 3' -51.5 NC_007497.1 + 23450 0.75 0.336861
Target:  5'- aGCggCGGCcgccuUCAUGUCGGCGAUCUc- -3'
miRNA:   3'- -UGaaGCCGu----AGUACAGCCGUUGGAag -5'
33168 3' -51.5 NC_007497.1 + 36291 1.11 0.001291
Target:  5'- cACUUCGGCAUCAUGUCGGCAACCUUCa -3'
miRNA:   3'- -UGAAGCCGUAGUACAGCCGUUGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.