miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33168 5' -52.8 NC_007497.1 + 26776 0.68 0.682239
Target:  5'- cGGcc-GCUGCUGAaucUGCGcGCCGUCGUc -3'
miRNA:   3'- aCCuuuUGACGGCU---GCGC-UGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 1631 0.68 0.675511
Target:  5'- cGGGGAugUGCCGGagccuuugcucauauCgGCGAuccgUCAUCGCg -3'
miRNA:   3'- aCCUUUugACGGCU---------------G-CGCU----GGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 40305 0.68 0.671017
Target:  5'- cGGGu--CUGCCGACGU--CCGaCGCg -3'
miRNA:   3'- aCCUuuuGACGGCUGCGcuGGUaGCG- -5'
33168 5' -52.8 NC_007497.1 + 35539 0.68 0.671017
Target:  5'- cGGAA---UGCCGGCGCuaguACCGaCGCg -3'
miRNA:   3'- aCCUUuugACGGCUGCGc---UGGUaGCG- -5'
33168 5' -52.8 NC_007497.1 + 39221 0.68 0.671017
Target:  5'- aGGcc-GCcGCCGACGCGcuUCGUCGUg -3'
miRNA:   3'- aCCuuuUGaCGGCUGCGCu-GGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 16502 0.69 0.64847
Target:  5'- cGGAugaaUGCCGACGacauGACCGcacugcgcaaguUCGCg -3'
miRNA:   3'- aCCUuuugACGGCUGCg---CUGGU------------AGCG- -5'
33168 5' -52.8 NC_007497.1 + 34578 0.69 0.637167
Target:  5'- cGGcgGGCUGcCCGGCauccugaCGACCGUCGg -3'
miRNA:   3'- aCCuuUUGAC-GGCUGc------GCUGGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 28187 0.69 0.637167
Target:  5'- cGGAAGuGCUGCgCGGCGCcuuugacggcaaGACgaCGUCGCu -3'
miRNA:   3'- aCCUUU-UGACG-GCUGCG------------CUG--GUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 32247 0.69 0.637167
Target:  5'- aGGGcgGAACgGCCGACGCG----UCGCa -3'
miRNA:   3'- aCCU--UUUGaCGGCUGCGCugguAGCG- -5'
33168 5' -52.8 NC_007497.1 + 34955 0.69 0.624728
Target:  5'- cGGGAcgcgaaucgccggGAC-GCCGuAUGCGGCCGugaUCGCg -3'
miRNA:   3'- aCCUU-------------UUGaCGGC-UGCGCUGGU---AGCG- -5'
33168 5' -52.8 NC_007497.1 + 28128 0.7 0.592011
Target:  5'- cGGAucGAGCUGCCGAgUGCGAaauCCGgcuggcuggugCGCg -3'
miRNA:   3'- aCCU--UUUGACGGCU-GCGCU---GGUa----------GCG- -5'
33168 5' -52.8 NC_007497.1 + 34583 0.7 0.592011
Target:  5'- cGGGcgGCcGCCGuuuGCGCGACCGcggcaCGCu -3'
miRNA:   3'- aCCUuuUGaCGGC---UGCGCUGGUa----GCG- -5'
33168 5' -52.8 NC_007497.1 + 29260 0.7 0.592011
Target:  5'- cGGAcAGGCgGCCGuacaugugauGCGCGaacauGCCGUCGCc -3'
miRNA:   3'- aCCU-UUUGaCGGC----------UGCGC-----UGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 7198 0.7 0.569608
Target:  5'- gGGAGGGCaGCU--UGUGACCGUCGUc -3'
miRNA:   3'- aCCUUUUGaCGGcuGCGCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 4976 0.7 0.569608
Target:  5'- -uGAAAagccGCUgGCCGGUGCGGCCGUCGg -3'
miRNA:   3'- acCUUU----UGA-CGGCUGCGCUGGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 18503 0.7 0.569608
Target:  5'- cGaGAGAACUgGCCGGCcCGACgAUuCGCg -3'
miRNA:   3'- aC-CUUUUGA-CGGCUGcGCUGgUA-GCG- -5'
33168 5' -52.8 NC_007497.1 + 40586 0.7 0.569608
Target:  5'- cGGGAAuac-CCGGCGCGcGCCAUCGa -3'
miRNA:   3'- aCCUUUugacGGCUGCGC-UGGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 6145 0.71 0.536426
Target:  5'- cGGAGAACUGCUcgGACGgcgaGAUUAUCGa -3'
miRNA:   3'- aCCUUUUGACGG--CUGCg---CUGGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 43896 0.71 0.493303
Target:  5'- cGGuuuGAAGCUGuuGuCGCGACCuccuUCGUc -3'
miRNA:   3'- aCC---UUUUGACggCuGCGCUGGu---AGCG- -5'
33168 5' -52.8 NC_007497.1 + 8182 0.71 0.493303
Target:  5'- cUGGGAAAuCUGgagaCGACGCG-CgAUCGCg -3'
miRNA:   3'- -ACCUUUU-GACg---GCUGCGCuGgUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.