miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33169 3' -54.3 NC_007497.1 + 34604 0.66 0.706288
Target:  5'- gUGGGCucaggGCUGUUGUCGGuggUCGg -3'
miRNA:   3'- aACCCGuag--CGACAGCGGCUua-AGCg -5'
33169 3' -54.3 NC_007497.1 + 27075 0.66 0.69515
Target:  5'- -cGGGCGUCGCacaGUCGCgcgccgUGAAgUCGg -3'
miRNA:   3'- aaCCCGUAGCGa--CAGCG------GCUUaAGCg -5'
33169 3' -54.3 NC_007497.1 + 36498 0.66 0.683947
Target:  5'- cUGcGCG-CGCagaUGUCggcuGCCGAGUUCGCa -3'
miRNA:   3'- aACcCGUaGCG---ACAG----CGGCUUAAGCG- -5'
33169 3' -54.3 NC_007497.1 + 28365 0.66 0.672692
Target:  5'- gUUGGGauccCGCUGaCGUCGGAUgCGCc -3'
miRNA:   3'- -AACCCgua-GCGACaGCGGCUUAaGCG- -5'
33169 3' -54.3 NC_007497.1 + 32854 0.66 0.672692
Target:  5'- -cGGGCGcUCGCUcuguaucaggaGUcCGCCGAGaaCGCc -3'
miRNA:   3'- aaCCCGU-AGCGA-----------CA-GCGGCUUaaGCG- -5'
33169 3' -54.3 NC_007497.1 + 23571 0.66 0.672692
Target:  5'- cUGGGCGcgGCggcgGgCGCCGGcgUCGUg -3'
miRNA:   3'- aACCCGUagCGa---CaGCGGCUuaAGCG- -5'
33169 3' -54.3 NC_007497.1 + 28936 0.67 0.650071
Target:  5'- -gGGGCAgcacUgGCcGUCGUCGGcUUCGUg -3'
miRNA:   3'- aaCCCGU----AgCGaCAGCGGCUuAAGCG- -5'
33169 3' -54.3 NC_007497.1 + 38104 0.67 0.648938
Target:  5'- -cGGGUAUCGCaacCGCCGGuguccguGUUCGg -3'
miRNA:   3'- aaCCCGUAGCGacaGCGGCU-------UAAGCg -5'
33169 3' -54.3 NC_007497.1 + 22936 0.67 0.593402
Target:  5'- -aGGGC--CGCUGUCGUCGccgcccCGCa -3'
miRNA:   3'- aaCCCGuaGCGACAGCGGCuuaa--GCG- -5'
33169 3' -54.3 NC_007497.1 + 23223 0.67 0.593402
Target:  5'- -aGGGCGUCGCcgGcUGCCGGGcUUCcgGCg -3'
miRNA:   3'- aaCCCGUAGCGa-CaGCGGCUU-AAG--CG- -5'
33169 3' -54.3 NC_007497.1 + 37544 0.68 0.582132
Target:  5'- --cGGUGUCGCUcgaauaGUCGUCGggUaagUCGCu -3'
miRNA:   3'- aacCCGUAGCGA------CAGCGGCuuA---AGCG- -5'
33169 3' -54.3 NC_007497.1 + 32459 0.68 0.570907
Target:  5'- ---uGCAUgGCUGUCGaacgaCGAGUUCGUc -3'
miRNA:   3'- aaccCGUAgCGACAGCg----GCUUAAGCG- -5'
33169 3' -54.3 NC_007497.1 + 30298 0.68 0.556395
Target:  5'- -cGGGCGUgcaggucgaguucaCGCUGUCGUCGc---CGCu -3'
miRNA:   3'- aaCCCGUA--------------GCGACAGCGGCuuaaGCG- -5'
33169 3' -54.3 NC_007497.1 + 34765 0.69 0.526621
Target:  5'- -aGGGUcUCGCgGcCGCCGAg--CGCg -3'
miRNA:   3'- aaCCCGuAGCGaCaGCGGCUuaaGCG- -5'
33169 3' -54.3 NC_007497.1 + 32247 0.69 0.523348
Target:  5'- -aGGGCggaacggccgacgcGUCGCagaugaUGgcgagCGCCGAGUUUGCg -3'
miRNA:   3'- aaCCCG--------------UAGCG------ACa----GCGGCUUAAGCG- -5'
33169 3' -54.3 NC_007497.1 + 15456 0.69 0.494269
Target:  5'- -aGGGaagCGCUGUCGC---AUUCGCg -3'
miRNA:   3'- aaCCCguaGCGACAGCGgcuUAAGCG- -5'
33169 3' -54.3 NC_007497.1 + 41527 0.69 0.483685
Target:  5'- -aGGGCG-CGCUGUUGCgCGGca-CGCu -3'
miRNA:   3'- aaCCCGUaGCGACAGCG-GCUuaaGCG- -5'
33169 3' -54.3 NC_007497.1 + 8230 0.7 0.442502
Target:  5'- cUGGGCcUUGaUGUCGCUGAGaagCGCg -3'
miRNA:   3'- aACCCGuAGCgACAGCGGCUUaa-GCG- -5'
33169 3' -54.3 NC_007497.1 + 27218 0.71 0.403374
Target:  5'- -gGGGCAggugaUCGCUaUUGCCGAuccgCGCa -3'
miRNA:   3'- aaCCCGU-----AGCGAcAGCGGCUuaa-GCG- -5'
33169 3' -54.3 NC_007497.1 + 17831 0.71 0.403374
Target:  5'- -gGaGGCA-CGUc-UCGCCGAAUUCGCg -3'
miRNA:   3'- aaC-CCGUaGCGacAGCGGCUUAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.