miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33169 5' -55.4 NC_007497.1 + 34635 0.66 0.692286
Target:  5'- cGGCGGUCgccgCGGuggcgccuCGUuCGGCGCGCu- -3'
miRNA:   3'- cCCGCCAGa---GCU--------GUAuGUCGUGCGcu -5'
33169 5' -55.4 NC_007497.1 + 37120 0.66 0.684628
Target:  5'- cGGCGGccgUCgacggcaucgugacgUCGACGUACAGCguucgggucagcgGCGCGc -3'
miRNA:   3'- cCCGCC---AG---------------AGCUGUAUGUCG-------------UGCGCu -5'
33169 5' -55.4 NC_007497.1 + 14764 0.66 0.659312
Target:  5'- uGGUGGugaUCUCGuuCAUGCuucaccucGCGCGCGGa -3'
miRNA:   3'- cCCGCC---AGAGCu-GUAUGu-------CGUGCGCU- -5'
33169 5' -55.4 NC_007497.1 + 10949 0.66 0.648255
Target:  5'- gGGGCGGUagcgCaGCGUuCGGUGCGCGu -3'
miRNA:   3'- -CCCGCCAga--GcUGUAuGUCGUGCGCu -5'
33169 5' -55.4 NC_007497.1 + 1314 0.66 0.637183
Target:  5'- uGGCGuaCUCGACGcaGCAGUACgGCGAa -3'
miRNA:   3'- cCCGCcaGAGCUGUa-UGUCGUG-CGCU- -5'
33169 5' -55.4 NC_007497.1 + 29452 0.67 0.626107
Target:  5'- cGGUuuUCUCGACGU-CGGC-CGCGAc -3'
miRNA:   3'- cCCGccAGAGCUGUAuGUCGuGCGCU- -5'
33169 5' -55.4 NC_007497.1 + 23561 0.67 0.615036
Target:  5'- cGGCGGgcgC-CGGCGUcguGCAccugaucagcGCGCGCGAg -3'
miRNA:   3'- cCCGCCa--GaGCUGUA---UGU----------CGUGCGCU- -5'
33169 5' -55.4 NC_007497.1 + 40308 0.67 0.60398
Target:  5'- aGGCgGGUCUgcCGACGUccgACGcGUugGCGAa -3'
miRNA:   3'- cCCG-CCAGA--GCUGUA---UGU-CGugCGCU- -5'
33169 5' -55.4 NC_007497.1 + 43208 0.67 0.592948
Target:  5'- uGGGCGGaacuggCUCG-CAUGgGcGCACGCu- -3'
miRNA:   3'- -CCCGCCa-----GAGCuGUAUgU-CGUGCGcu -5'
33169 5' -55.4 NC_007497.1 + 26859 0.67 0.58195
Target:  5'- -cGCGGcgaUCGACG-ACGGCGCGCa- -3'
miRNA:   3'- ccCGCCag-AGCUGUaUGUCGUGCGcu -5'
33169 5' -55.4 NC_007497.1 + 17270 0.68 0.570995
Target:  5'- cGGGCGG-CUgCGGg--GCGGC-CGCGAu -3'
miRNA:   3'- -CCCGCCaGA-GCUguaUGUCGuGCGCU- -5'
33169 5' -55.4 NC_007497.1 + 37357 0.68 0.570995
Target:  5'- aGGGCGGUCagucguccgagaUCGACGcaacCAcGCuCGCGAg -3'
miRNA:   3'- -CCCGCCAG------------AGCUGUau--GU-CGuGCGCU- -5'
33169 5' -55.4 NC_007497.1 + 15917 0.68 0.570995
Target:  5'- aGGGUGGgugCUCGgcucGCAUAUGGCA-GCGu -3'
miRNA:   3'- -CCCGCCa--GAGC----UGUAUGUCGUgCGCu -5'
33169 5' -55.4 NC_007497.1 + 26429 0.68 0.570995
Target:  5'- gGGGaCGG-CUCGGCAgGCGaCACGCa- -3'
miRNA:   3'- -CCC-GCCaGAGCUGUaUGUcGUGCGcu -5'
33169 5' -55.4 NC_007497.1 + 18503 0.68 0.560089
Target:  5'- gGGGCGGUCUUGAgg-GCAGaUACuCGGu -3'
miRNA:   3'- -CCCGCCAGAGCUguaUGUC-GUGcGCU- -5'
33169 5' -55.4 NC_007497.1 + 19054 0.68 0.560089
Target:  5'- cGGaGCGGUaUCGGC-UGCuGCgACGCGGu -3'
miRNA:   3'- -CC-CGCCAgAGCUGuAUGuCG-UGCGCU- -5'
33169 5' -55.4 NC_007497.1 + 34583 0.68 0.538462
Target:  5'- cGGGCGGcCgccguuugcgCGACc-GCGGCACGCu- -3'
miRNA:   3'- -CCCGCCaGa---------GCUGuaUGUCGUGCGcu -5'
33169 5' -55.4 NC_007497.1 + 20510 0.68 0.526688
Target:  5'- aGGCGGUCaaguccuUCGACGauUAGCACG-GAg -3'
miRNA:   3'- cCCGCCAG-------AGCUGUauGUCGUGCgCU- -5'
33169 5' -55.4 NC_007497.1 + 41294 0.68 0.517128
Target:  5'- uGGcGCGGcUCaauUCGACGUGCGGCcggAUGCGu -3'
miRNA:   3'- -CC-CGCC-AG---AGCUGUAUGUCG---UGCGCu -5'
33169 5' -55.4 NC_007497.1 + 4188 0.68 0.517128
Target:  5'- -aGCGGUUUaUGGC-UGCGGUGCGCGAc -3'
miRNA:   3'- ccCGCCAGA-GCUGuAUGUCGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.