miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33170 5' -57.5 NC_007497.1 + 21328 0.66 0.553818
Target:  5'- aCCGcGCGCCGgacgGcucagCUCGC-UGUCGCUa -3'
miRNA:   3'- -GGUuCGCGGUa---Ca----GAGCGcACGGCGA- -5'
33170 5' -57.5 NC_007497.1 + 12282 0.66 0.543069
Target:  5'- gCGGGCgGCC-UGUCggauggcgUCGCG-GCCGCc -3'
miRNA:   3'- gGUUCG-CGGuACAG--------AGCGCaCGGCGa -5'
33170 5' -57.5 NC_007497.1 + 2399 0.66 0.532389
Target:  5'- cCCAaacAGCGCC-UGUgC-CGCGaUGUCGCg -3'
miRNA:   3'- -GGU---UCGCGGuACA-GaGCGC-ACGGCGa -5'
33170 5' -57.5 NC_007497.1 + 34109 0.66 0.521787
Target:  5'- aCCAAGaagaugaguaGCUAUGcgaUCGCG-GCCGCg -3'
miRNA:   3'- -GGUUCg---------CGGUACag-AGCGCaCGGCGa -5'
33170 5' -57.5 NC_007497.1 + 43991 0.66 0.500836
Target:  5'- aCGGGCGCC--GUCggCGUGaucgaUGCCGCa -3'
miRNA:   3'- gGUUCGCGGuaCAGa-GCGC-----ACGGCGa -5'
33170 5' -57.5 NC_007497.1 + 2828 0.67 0.490499
Target:  5'- aCCAuGCGCCAgcaC-CGCGUGCaUGCUu -3'
miRNA:   3'- -GGUuCGCGGUacaGaGCGCACG-GCGA- -5'
33170 5' -57.5 NC_007497.1 + 3139 0.67 0.480264
Target:  5'- ---cGCGCgCAUGUacgGUGUGCCGCg -3'
miRNA:   3'- gguuCGCG-GUACAgagCGCACGGCGa -5'
33170 5' -57.5 NC_007497.1 + 24102 0.67 0.474172
Target:  5'- ---cGCGCCAUGUuccugcaacccacccCUCGCauUGCCGCc -3'
miRNA:   3'- gguuCGCGGUACA---------------GAGCGc-ACGGCGa -5'
33170 5' -57.5 NC_007497.1 + 34837 0.67 0.460113
Target:  5'- cUCGAGCucgcccugcgcgGCCGcgGUCUCGCGcgcgaucacgGCCGCa -3'
miRNA:   3'- -GGUUCG------------CGGUa-CAGAGCGCa---------CGGCGa -5'
33170 5' -57.5 NC_007497.1 + 14078 0.68 0.440419
Target:  5'- aCAGcGCGUCGUGUCgcgGCGUaGUCGCg -3'
miRNA:   3'- gGUU-CGCGGUACAGag-CGCA-CGGCGa -5'
33170 5' -57.5 NC_007497.1 + 32614 0.68 0.430754
Target:  5'- aCAGGCGCCaAUGccgCUCGCGcagcgaaCCGCg -3'
miRNA:   3'- gGUUCGCGG-UACa--GAGCGCac-----GGCGa -5'
33170 5' -57.5 NC_007497.1 + 31388 0.68 0.430754
Target:  5'- -uGAGCGCCcUGaUCU-GUGUGCCGUc -3'
miRNA:   3'- ggUUCGCGGuAC-AGAgCGCACGGCGa -5'
33170 5' -57.5 NC_007497.1 + 33743 0.68 0.411802
Target:  5'- gCAGGCGaaauCCgGUGaUCUCGuCGUGCUGCUu -3'
miRNA:   3'- gGUUCGC----GG-UAC-AGAGC-GCACGGCGA- -5'
33170 5' -57.5 NC_007497.1 + 40620 0.68 0.411802
Target:  5'- -uGAGCGCCAuUGcCUUGCG-GCCGg- -3'
miRNA:   3'- ggUUCGCGGU-ACaGAGCGCaCGGCga -5'
33170 5' -57.5 NC_007497.1 + 27569 0.68 0.393376
Target:  5'- cCCGAGCGUC-UGcCUgCGCGggcgGCUGCg -3'
miRNA:   3'- -GGUUCGCGGuACaGA-GCGCa---CGGCGa -5'
33170 5' -57.5 NC_007497.1 + 38533 0.69 0.384365
Target:  5'- gCuGGCGCCAcggcucggcaUGUCgggCGCGaUGCUGCg -3'
miRNA:   3'- gGuUCGCGGU----------ACAGa--GCGC-ACGGCGa -5'
33170 5' -57.5 NC_007497.1 + 38598 0.69 0.349717
Target:  5'- cCCAcaaGCUGaGUCUCGCGgagGCCGCUc -3'
miRNA:   3'- -GGUucgCGGUaCAGAGCGCa--CGGCGA- -5'
33170 5' -57.5 NC_007497.1 + 3913 0.69 0.34141
Target:  5'- gCGAGuCGUCGUG-CaCGCGUGCCGUc -3'
miRNA:   3'- gGUUC-GCGGUACaGaGCGCACGGCGa -5'
33170 5' -57.5 NC_007497.1 + 16668 0.7 0.333246
Target:  5'- gCCGGgagcGCGCCg---CUCGCGUGaCCGCg -3'
miRNA:   3'- -GGUU----CGCGGuacaGAGCGCAC-GGCGa -5'
33170 5' -57.5 NC_007497.1 + 18259 0.7 0.30962
Target:  5'- -gGGGCGCUAcGUCgcgCGUGUGCgCGCg -3'
miRNA:   3'- ggUUCGCGGUaCAGa--GCGCACG-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.