miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33171 5' -56.5 NC_007497.1 + 29083 0.66 0.580084
Target:  5'- ----aGUGCCCgcaCGGCCUcGGCuGUCg -3'
miRNA:   3'- cuuaaCGCGGGa--GCCGGAcUCGcUAG- -5'
33171 5' -56.5 NC_007497.1 + 5688 0.66 0.557961
Target:  5'- cGGAUUGCGUUCauugccauuagUCGGuCCUcAGUGAUCg -3'
miRNA:   3'- -CUUAACGCGGG-----------AGCC-GGAcUCGCUAG- -5'
33171 5' -56.5 NC_007497.1 + 3025 0.66 0.557961
Target:  5'- aGAAUUGcCGCCUUCGaaaccgucGCCaucUGAGCG-UCg -3'
miRNA:   3'- -CUUAAC-GCGGGAGC--------CGG---ACUCGCuAG- -5'
33171 5' -56.5 NC_007497.1 + 37916 0.66 0.546988
Target:  5'- uGAAgUGCGCgUCUCGGUuuccgggcgccaUUGGGUGAUCu -3'
miRNA:   3'- -CUUaACGCG-GGAGCCG------------GACUCGCUAG- -5'
33171 5' -56.5 NC_007497.1 + 23431 0.66 0.536084
Target:  5'- -----cCGCCUUCgccugGGCCUGAGCGGc- -3'
miRNA:   3'- cuuaacGCGGGAG-----CCGGACUCGCUag -5'
33171 5' -56.5 NC_007497.1 + 25967 0.67 0.514513
Target:  5'- ---aUGuCGCCCUCGGCaaucgccgaCUGcAGCGAc- -3'
miRNA:   3'- cuuaAC-GCGGGAGCCG---------GAC-UCGCUag -5'
33171 5' -56.5 NC_007497.1 + 34665 0.67 0.514513
Target:  5'- ----cGCGCUCgCGcGCCUGcgucGCGAUCg -3'
miRNA:   3'- cuuaaCGCGGGaGC-CGGACu---CGCUAG- -5'
33171 5' -56.5 NC_007497.1 + 36577 0.67 0.514513
Target:  5'- ------gGCCCagcgaGGCCUGAGCGAagUCg -3'
miRNA:   3'- cuuaacgCGGGag---CCGGACUCGCU--AG- -5'
33171 5' -56.5 NC_007497.1 + 43994 0.67 0.493305
Target:  5'- ----gGCGCCgUCGGCgUGAuCGAUg -3'
miRNA:   3'- cuuaaCGCGGgAGCCGgACUcGCUAg -5'
33171 5' -56.5 NC_007497.1 + 17735 0.68 0.4323
Target:  5'- ----gGCGCCCgcagUGGCgCcGGGUGAUCg -3'
miRNA:   3'- cuuaaCGCGGGa---GCCG-GaCUCGCUAG- -5'
33171 5' -56.5 NC_007497.1 + 31810 0.68 0.412959
Target:  5'- cGAAUcGC-CCCUgCGGCCgGAGCGGc- -3'
miRNA:   3'- -CUUAaCGcGGGA-GCCGGaCUCGCUag -5'
33171 5' -56.5 NC_007497.1 + 44483 0.69 0.367026
Target:  5'- --cUUGCGUgaUCUCGGCauggCUGGGUGGUCg -3'
miRNA:   3'- cuuAACGCG--GGAGCCG----GACUCGCUAG- -5'
33171 5' -56.5 NC_007497.1 + 37893 1.1 0.000399
Target:  5'- cGAAUUGCGCCCUCGGCCUGAGCGAUCg -3'
miRNA:   3'- -CUUAACGCGGGAGCCGGACUCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.