miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33172 3' -55 NC_007497.1 + 21693 0.65 0.701874
Target:  5'- --cGCCGCUGAucgcuggaaaCGcAGCGGAacaaucggccucaUGCUCGu -3'
miRNA:   3'- gaaCGGUGACU----------GCuUCGCCU-------------GCGAGC- -5'
33172 3' -55 NC_007497.1 + 7931 0.66 0.691986
Target:  5'- -gUGCCgGCUGA-GAAGCGGGuauuUGCaUCGg -3'
miRNA:   3'- gaACGG-UGACUgCUUCGCCU----GCG-AGC- -5'
33172 3' -55 NC_007497.1 + 2826 0.66 0.691986
Target:  5'- --gGCCAUccGACGGAGuCGGccauucugcguGCGCUCa -3'
miRNA:   3'- gaaCGGUGa-CUGCUUC-GCC-----------UGCGAGc -5'
33172 3' -55 NC_007497.1 + 31474 0.66 0.680944
Target:  5'- gUUGCCACgcaagguaacGACGGcacacAGaucaGGGCGCUCa -3'
miRNA:   3'- gAACGGUGa---------CUGCU-----UCg---CCUGCGAGc -5'
33172 3' -55 NC_007497.1 + 17243 0.67 0.636406
Target:  5'- --gGCCggGCUGACGGacgagcAGCGcagcACGCUCGa -3'
miRNA:   3'- gaaCGG--UGACUGCU------UCGCc---UGCGAGC- -5'
33172 3' -55 NC_007497.1 + 38211 0.68 0.581818
Target:  5'- --cGCCgGCgcgaacgugauccggGACGAGGCGcGCGCUCGc -3'
miRNA:   3'- gaaCGG-UGa--------------CUGCUUCGCcUGCGAGC- -5'
33172 3' -55 NC_007497.1 + 44295 0.68 0.580711
Target:  5'- uCUUGCCGCcguUGGCGAucaaccgcGGCGGugcCGC-CGg -3'
miRNA:   3'- -GAACGGUG---ACUGCU--------UCGCCu--GCGaGC- -5'
33172 3' -55 NC_007497.1 + 27202 0.68 0.569668
Target:  5'- aUUGCCgauccGCgcaaGGCGggGCGG-CGCaUCGg -3'
miRNA:   3'- gAACGG-----UGa---CUGCuuCGCCuGCG-AGC- -5'
33172 3' -55 NC_007497.1 + 26881 0.68 0.547745
Target:  5'- -cUGCaCGCUGACGAcGCGGuACaGCUgCGc -3'
miRNA:   3'- gaACG-GUGACUGCUuCGCC-UG-CGA-GC- -5'
33172 3' -55 NC_007497.1 + 32878 0.68 0.526096
Target:  5'- --cGCgAUUGGCGuguuggcgcGAGcCGGGCGCUCGc -3'
miRNA:   3'- gaaCGgUGACUGC---------UUC-GCCUGCGAGC- -5'
33172 3' -55 NC_007497.1 + 34275 0.68 0.526096
Target:  5'- --cGUCACUGACGAggaucaGGCGG-CaCUCGa -3'
miRNA:   3'- gaaCGGUGACUGCU------UCGCCuGcGAGC- -5'
33172 3' -55 NC_007497.1 + 23576 0.69 0.515392
Target:  5'- --cGCUGCUGggcGCGGcGGCGGGCGC-CGg -3'
miRNA:   3'- gaaCGGUGAC---UGCU-UCGCCUGCGaGC- -5'
33172 3' -55 NC_007497.1 + 6630 0.7 0.41415
Target:  5'- gUUGgaAUUGACGAGGCGGugGCg-- -3'
miRNA:   3'- gAACggUGACUGCUUCGCCugCGagc -5'
33172 3' -55 NC_007497.1 + 17218 0.7 0.41415
Target:  5'- --aGCCGCccGCGcAGGCaGACGCUCGg -3'
miRNA:   3'- gaaCGGUGacUGC-UUCGcCUGCGAGC- -5'
33172 3' -55 NC_007497.1 + 13614 0.71 0.377201
Target:  5'- --gGCCACUGAgGAagAGCGGGcCGC-CGc -3'
miRNA:   3'- gaaCGGUGACUgCU--UCGCCU-GCGaGC- -5'
33172 3' -55 NC_007497.1 + 15240 0.72 0.334239
Target:  5'- --cGCCugUGGCGcaucccGCGGACGC-CGg -3'
miRNA:   3'- gaaCGGugACUGCuu----CGCCUGCGaGC- -5'
33172 3' -55 NC_007497.1 + 29694 0.74 0.252706
Target:  5'- -gUGUCGCUcGGCGuucAGGCGGACgGCUCGa -3'
miRNA:   3'- gaACGGUGA-CUGC---UUCGCCUG-CGAGC- -5'
33172 3' -55 NC_007497.1 + 38446 1.08 0.000965
Target:  5'- cCUUGCCACUGACGAAGCGGACGCUCGc -3'
miRNA:   3'- -GAACGGUGACUGCUUCGCCUGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.