miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33173 3' -51.3 NC_007497.1 + 35582 0.66 0.876128
Target:  5'- --cGAucGCGUCgGCCAcgccggGCaAUUCCUCCa -3'
miRNA:   3'- cuaCU--CGCAG-CGGUa-----UGcUAAGGAGG- -5'
33173 3' -51.3 NC_007497.1 + 17262 0.66 0.867947
Target:  5'- uGcgGGGCG--GCC--GCGAUUCCUCUc -3'
miRNA:   3'- -CuaCUCGCagCGGuaUGCUAAGGAGG- -5'
33173 3' -51.3 NC_007497.1 + 2522 0.67 0.813616
Target:  5'- uGAUGGcGCGUCGCCGcGCGAacgCC-Ca -3'
miRNA:   3'- -CUACU-CGCAGCGGUaUGCUaa-GGaGg -5'
33173 3' -51.3 NC_007497.1 + 31325 0.67 0.803778
Target:  5'- cGGUGGGCGUguccUGCUggGCGGcgCUUCCg -3'
miRNA:   3'- -CUACUCGCA----GCGGuaUGCUaaGGAGG- -5'
33173 3' -51.3 NC_007497.1 + 17746 0.68 0.793746
Target:  5'- cGAUGAGCucgCGCCGUACucuAUguugUCUCCu -3'
miRNA:   3'- -CUACUCGca-GCGGUAUGc--UAa---GGAGG- -5'
33173 3' -51.3 NC_007497.1 + 33040 0.68 0.783531
Target:  5'- cGAUGAGUuccGUCGCCGacgugACGAUUUCa-- -3'
miRNA:   3'- -CUACUCG---CAGCGGUa----UGCUAAGGagg -5'
33173 3' -51.3 NC_007497.1 + 14111 0.68 0.772099
Target:  5'- cGUGAGCGUgGCgAUGuCGAUgggggucaugucuUUCUCCu -3'
miRNA:   3'- cUACUCGCAgCGgUAU-GCUA-------------AGGAGG- -5'
33173 3' -51.3 NC_007497.1 + 17779 0.69 0.71912
Target:  5'- --aGAGcCGUCGUCGUgaaggGCGAUUCCgUCg -3'
miRNA:   3'- cuaCUC-GCAGCGGUA-----UGCUAAGG-AGg -5'
33173 3' -51.3 NC_007497.1 + 3094 0.69 0.707984
Target:  5'- --aGcGCGUCGCCGU-CGAaUCC-CCa -3'
miRNA:   3'- cuaCuCGCAGCGGUAuGCUaAGGaGG- -5'
33173 3' -51.3 NC_007497.1 + 26016 0.7 0.674145
Target:  5'- uGGUG-GCGUCGCCc-GCGuacUCUUCCg -3'
miRNA:   3'- -CUACuCGCAGCGGuaUGCua-AGGAGG- -5'
33173 3' -51.3 NC_007497.1 + 35519 0.7 0.639918
Target:  5'- cGGUGAGC-UUGCCGUccucgGCGAgcgCCUUCa -3'
miRNA:   3'- -CUACUCGcAGCGGUA-----UGCUaa-GGAGG- -5'
33173 3' -51.3 NC_007497.1 + 23223 0.7 0.639918
Target:  5'- --aGGGCGUCGCCGgcUGCcGggCUUCCg -3'
miRNA:   3'- cuaCUCGCAGCGGU--AUGcUaaGGAGG- -5'
33173 3' -51.3 NC_007497.1 + 39083 1.12 0.001274
Target:  5'- uGAUGAGCGUCGCCAUACGAUUCCUCCu -3'
miRNA:   3'- -CUACUCGCAGCGGUAUGCUAAGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.