miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33173 5' -57.6 NC_007497.1 + 27691 0.66 0.541922
Target:  5'- gACGGAaaAGGcGGCGUCGagccGCGAuuCGCCUg- -3'
miRNA:   3'- -UGCUU--UCC-CCGCAGU----UGCU--GCGGGga -5'
33173 5' -57.6 NC_007497.1 + 21465 0.67 0.49987
Target:  5'- cUGAAAGcaGGGCGUCcgUGACGCgCUg -3'
miRNA:   3'- uGCUUUC--CCCGCAGuuGCUGCGgGGa -5'
33173 5' -57.6 NC_007497.1 + 42896 0.67 0.493683
Target:  5'- gACGGAAcgccgcaucgcGGcGGCGUCGgggcagcgaucgaagGCGACgaaGCCCCUg -3'
miRNA:   3'- -UGCUUU-----------CC-CCGCAGU---------------UGCUG---CGGGGA- -5'
33173 5' -57.6 NC_007497.1 + 23294 0.67 0.479388
Target:  5'- cCGGAAGcccGGCaGcCGGCGACGCCCUc -3'
miRNA:   3'- uGCUUUCc--CCG-CaGUUGCUGCGGGGa -5'
33173 5' -57.6 NC_007497.1 + 33871 0.67 0.479388
Target:  5'- gACGAAGGGGGCGaacgCAGcCGAgGCgCg- -3'
miRNA:   3'- -UGCUUUCCCCGCa---GUU-GCUgCGgGga -5'
33173 5' -57.6 NC_007497.1 + 8699 0.67 0.469302
Target:  5'- aGCGGAAGcGGGCGgggcgCGuCGGcCGCCCg- -3'
miRNA:   3'- -UGCUUUC-CCCGCa----GUuGCU-GCGGGga -5'
33173 5' -57.6 NC_007497.1 + 23003 0.68 0.439718
Target:  5'- ----cGGGGGCGgCGACGACagcgGCCCUg -3'
miRNA:   3'- ugcuuUCCCCGCaGUUGCUG----CGGGGa -5'
33173 5' -57.6 NC_007497.1 + 40894 0.68 0.411227
Target:  5'- cACGAcauGGcGGCcgcugCAGCGACGCUCCg -3'
miRNA:   3'- -UGCUuu-CC-CCGca---GUUGCUGCGGGGa -5'
33173 5' -57.6 NC_007497.1 + 36695 0.68 0.39288
Target:  5'- cGCGAAuucGGCGaCAGCGAUGCCCa- -3'
miRNA:   3'- -UGCUUuccCCGCaGUUGCUGCGGGga -5'
33173 5' -57.6 NC_007497.1 + 8618 0.69 0.383909
Target:  5'- cACGAcc-GGGCGgcCGACG-CGCCCCg -3'
miRNA:   3'- -UGCUuucCCCGCa-GUUGCuGCGGGGa -5'
33173 5' -57.6 NC_007497.1 + 21163 0.69 0.375074
Target:  5'- cCGAAAGGaaagaGCGUCGuACGGCGCCUg- -3'
miRNA:   3'- uGCUUUCCc----CGCAGU-UGCUGCGGGga -5'
33173 5' -57.6 NC_007497.1 + 17066 0.79 0.077671
Target:  5'- gGCGGAAGGGGCGgaacCGAUGGCGaUCCCg -3'
miRNA:   3'- -UGCUUUCCCCGCa---GUUGCUGC-GGGGa -5'
33173 5' -57.6 NC_007497.1 + 39203 0.86 0.022164
Target:  5'- cGCGAuugugguuuGAGGGGCGUCGuUGACGCCCCUu -3'
miRNA:   3'- -UGCU---------UUCCCCGCAGUuGCUGCGGGGA- -5'
33173 5' -57.6 NC_007497.1 + 39118 1.06 0.000725
Target:  5'- aACGAAAGGGGCGUCAACGACGCCCCUc -3'
miRNA:   3'- -UGCUUUCCCCGCAGUUGCUGCGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.