Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33174 | 5' | -57.4 | NC_007497.1 | + | 1719 | 0.66 | 0.515201 |
Target: 5'- --gGCCGCAcccagCGGGgaucacuCGGCGCGAuGUGUg -3' miRNA: 3'- uaaCGGCGUa----GCUU-------GCCGCGCU-CGCA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 32624 | 0.66 | 0.526929 |
Target: 5'- -aUGCCGCucgcgcagCGAACcGCGCGAgauccGCGa -3' miRNA: 3'- uaACGGCGua------GCUUGcCGCGCU-----CGCa -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 35223 | 0.66 | 0.484818 |
Target: 5'- -cUGCCGCGcuggugucucUUGAgaaGGCGCGgAGCGa -3' miRNA: 3'- uaACGGCGU----------AGCUug-CCGCGC-UCGCa -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 16410 | 0.66 | 0.516263 |
Target: 5'- -gUGUCcgagguugGCGUCGAGCaGCGCGuauGCGUu -3' miRNA: 3'- uaACGG--------CGUAGCUUGcCGCGCu--CGCA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 1251 | 0.66 | 0.516263 |
Target: 5'- -cUGCUGCGUCGAguACGccaGCGCGAaccGCa- -3' miRNA: 3'- uaACGGCGUAGCU--UGC---CGCGCU---CGca -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 34901 | 0.66 | 0.526929 |
Target: 5'- --gGCCGCGcaGGGCGaGCuCGAGCGUc -3' miRNA: 3'- uaaCGGCGUagCUUGC-CGcGCUCGCA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 16843 | 0.66 | 0.484818 |
Target: 5'- --gGCUGC-UCGuccgcCGGCGCGGGUGc -3' miRNA: 3'- uaaCGGCGuAGCuu---GCCGCGCUCGCa -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 35874 | 0.67 | 0.434572 |
Target: 5'- --aGCCGC-UCGAcgcgACGGCG-GAGCuGUa -3' miRNA: 3'- uaaCGGCGuAGCU----UGCCGCgCUCG-CA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 16342 | 0.67 | 0.434572 |
Target: 5'- --cGCCGCuGUUGAACGgaGCGCGccggccgucGGCGUa -3' miRNA: 3'- uaaCGGCG-UAGCUUGC--CGCGC---------UCGCA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 14858 | 0.67 | 0.444383 |
Target: 5'- uUUGCCGC--CGAGCagucGGCGaCGAGCa- -3' miRNA: 3'- uAACGGCGuaGCUUG----CCGC-GCUCGca -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 23244 | 0.67 | 0.444383 |
Target: 5'- --gGCCGCGUUG-ACGaGCGCGcgggagagcuGGCGg -3' miRNA: 3'- uaaCGGCGUAGCuUGC-CGCGC----------UCGCa -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 6047 | 0.67 | 0.424887 |
Target: 5'- --gGCCGCGUCGAGaaacacgaGGUGCuucGCGUg -3' miRNA: 3'- uaaCGGCGUAGCUUg-------CCGCGcu-CGCA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 9707 | 0.67 | 0.464371 |
Target: 5'- --aGCCGaCGUCGcggcCGGCGCGccgGGUGUg -3' miRNA: 3'- uaaCGGC-GUAGCuu--GCCGCGC---UCGCA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 31531 | 0.67 | 0.451325 |
Target: 5'- -aUGCCGUAUCGcgucccaacuuggucCGGCGUcAGCGUa -3' miRNA: 3'- uaACGGCGUAGCuu-------------GCCGCGcUCGCA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 41166 | 0.67 | 0.444383 |
Target: 5'- --cGCCGCAUCGu-CGGCGUucGCc- -3' miRNA: 3'- uaaCGGCGUAGCuuGCCGCGcuCGca -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 2762 | 0.67 | 0.434572 |
Target: 5'- --gGCCGacucCGUCGGAUGGCcagccCGAGCGUu -3' miRNA: 3'- uaaCGGC----GUAGCUUGCCGc----GCUCGCA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 36061 | 0.67 | 0.428746 |
Target: 5'- -aUGCCGCAUC-AGCGGCaCGAccaccaucacgcaccGCGUu -3' miRNA: 3'- uaACGGCGUAGcUUGCCGcGCU---------------CGCA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 33838 | 0.67 | 0.444383 |
Target: 5'- --gGCCGgGUUGAuuGCGGgGCGcGCGg -3' miRNA: 3'- uaaCGGCgUAGCU--UGCCgCGCuCGCa -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 38662 | 0.67 | 0.434572 |
Target: 5'- --gGCCGCAUCGAAucauucCGGgaGUuuGAGCGUg -3' miRNA: 3'- uaaCGGCGUAGCUU------GCCg-CG--CUCGCA- -5' |
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33174 | 5' | -57.4 | NC_007497.1 | + | 26859 | 0.67 | 0.464371 |
Target: 5'- --cGCgGCgAUCGAcgACGGCGCGcagauucagcAGCGg -3' miRNA: 3'- uaaCGgCG-UAGCU--UGCCGCGC----------UCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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