miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33174 5' -57.4 NC_007497.1 + 1251 0.66 0.516263
Target:  5'- -cUGCUGCGUCGAguACGccaGCGCGAaccGCa- -3'
miRNA:   3'- uaACGGCGUAGCU--UGC---CGCGCU---CGca -5'
33174 5' -57.4 NC_007497.1 + 1719 0.66 0.515201
Target:  5'- --gGCCGCAcccagCGGGgaucacuCGGCGCGAuGUGUg -3'
miRNA:   3'- uaaCGGCGUa----GCUU-------GCCGCGCU-CGCA- -5'
33174 5' -57.4 NC_007497.1 + 2762 0.67 0.434572
Target:  5'- --gGCCGacucCGUCGGAUGGCcagccCGAGCGUu -3'
miRNA:   3'- uaaCGGC----GUAGCUUGCCGc----GCUCGCA- -5'
33174 5' -57.4 NC_007497.1 + 4249 0.69 0.334757
Target:  5'- --cGCCgaGCAUCacgcgauGAGCGGCGUGuGCGUc -3'
miRNA:   3'- uaaCGG--CGUAG-------CUUGCCGCGCuCGCA- -5'
33174 5' -57.4 NC_007497.1 + 6047 0.67 0.424887
Target:  5'- --gGCCGCGUCGAGaaacacgaGGUGCuucGCGUg -3'
miRNA:   3'- uaaCGGCGUAGCUUg-------CCGCGcu-CGCA- -5'
33174 5' -57.4 NC_007497.1 + 6850 0.74 0.160816
Target:  5'- --aGUCGCuUCGAuCGGCGCGgAGCGUc -3'
miRNA:   3'- uaaCGGCGuAGCUuGCCGCGC-UCGCA- -5'
33174 5' -57.4 NC_007497.1 + 9707 0.67 0.464371
Target:  5'- --aGCCGaCGUCGcggcCGGCGCGccgGGUGUg -3'
miRNA:   3'- uaaCGGC-GUAGCuu--GCCGCGC---UCGCA- -5'
33174 5' -57.4 NC_007497.1 + 14103 0.68 0.405911
Target:  5'- -cUGCUGCGUgGAcgccgGCGGCcugcucgaagGCGAGCGc -3'
miRNA:   3'- uaACGGCGUAgCU-----UGCCG----------CGCUCGCa -5'
33174 5' -57.4 NC_007497.1 + 14858 0.67 0.444383
Target:  5'- uUUGCCGC--CGAGCagucGGCGaCGAGCa- -3'
miRNA:   3'- uAACGGCGuaGCUUG----CCGC-GCUCGca -5'
33174 5' -57.4 NC_007497.1 + 15710 0.72 0.216914
Target:  5'- -cUGCUacguGCGUUGGACGGUGgGAGCGc -3'
miRNA:   3'- uaACGG----CGUAGCUUGCCGCgCUCGCa -5'
33174 5' -57.4 NC_007497.1 + 16062 0.74 0.156423
Target:  5'- gGUUGauGCG-CGAAUGGCGCGGGCGc -3'
miRNA:   3'- -UAACggCGUaGCUUGCCGCGCUCGCa -5'
33174 5' -57.4 NC_007497.1 + 16342 0.67 0.434572
Target:  5'- --cGCCGCuGUUGAACGgaGCGCGccggccgucGGCGUa -3'
miRNA:   3'- uaaCGGCG-UAGCUUGC--CGCGC---------UCGCA- -5'
33174 5' -57.4 NC_007497.1 + 16410 0.66 0.516263
Target:  5'- -gUGUCcgagguugGCGUCGAGCaGCGCGuauGCGUu -3'
miRNA:   3'- uaACGG--------CGUAGCUUGcCGCGCu--CGCA- -5'
33174 5' -57.4 NC_007497.1 + 16745 0.68 0.369601
Target:  5'- --cGCgaCGCGgucacgCGAGCGGCGCGcucccGGCGUa -3'
miRNA:   3'- uaaCG--GCGUa-----GCUUGCCGCGC-----UCGCA- -5'
33174 5' -57.4 NC_007497.1 + 16843 0.66 0.484818
Target:  5'- --gGCUGC-UCGuccgcCGGCGCGGGUGc -3'
miRNA:   3'- uaaCGGCGuAGCuu---GCCGCGCUCGCa -5'
33174 5' -57.4 NC_007497.1 + 17279 0.68 0.369601
Target:  5'- -cUGCCuGCG-CGGGCGGCuGCgGGGCGg -3'
miRNA:   3'- uaACGG-CGUaGCUUGCCG-CG-CUCGCa -5'
33174 5' -57.4 NC_007497.1 + 23012 0.7 0.311598
Target:  5'- --gGCCGCAUgCGGggGCGGCGaCGAcaGCGg -3'
miRNA:   3'- uaaCGGCGUA-GCU--UGCCGC-GCU--CGCa -5'
33174 5' -57.4 NC_007497.1 + 23198 0.69 0.352299
Target:  5'- -gUGcCCGCAUCGccggccAGCaGUGCGAGCGc -3'
miRNA:   3'- uaAC-GGCGUAGC------UUGcCGCGCUCGCa -5'
33174 5' -57.4 NC_007497.1 + 23244 0.67 0.444383
Target:  5'- --gGCCGCGUUG-ACGaGCGCGcgggagagcuGGCGg -3'
miRNA:   3'- uaaCGGCGUAGCuUGC-CGCGC----------UCGCa -5'
33174 5' -57.4 NC_007497.1 + 23597 0.68 0.393866
Target:  5'- uAUUGCCGUAUCuccuGGucgcgcugcugggcGCGGCGgCGGGCGc -3'
miRNA:   3'- -UAACGGCGUAG----CU--------------UGCCGC-GCUCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.