miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33177 3' -57.5 NC_007497.1 + 1056 0.67 0.492757
Target:  5'- gCA-CGACUUGCCacacgagcacggcagGUCacgagGGGCAGCGCGc -3'
miRNA:   3'- gGUaGCUGAGCGG---------------CAG-----CUCGUCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 1234 0.72 0.274431
Target:  5'- aUCAUCGuuUCGCCGuacugcugcgUCGAGUacgccAGCGCGa -3'
miRNA:   3'- -GGUAGCugAGCGGC----------AGCUCG-----UCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 4207 0.77 0.128863
Target:  5'- aCCGUCGACgagUGCCG-CGAGCGguuuauggcugcgguGCGCGa -3'
miRNA:   3'- -GGUAGCUGa--GCGGCaGCUCGU---------------CGCGC- -5'
33177 3' -57.5 NC_007497.1 + 5827 0.67 0.488701
Target:  5'- cCCcgC-AUUUGCCuGUCGuGCGGUGCGg -3'
miRNA:   3'- -GGuaGcUGAGCGG-CAGCuCGUCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 6062 0.72 0.274431
Target:  5'- gCCAucagcUCGAuaauCUCGCCGUcCGAGCAGUucuccgGCGa -3'
miRNA:   3'- -GGU-----AGCU----GAGCGGCA-GCUCGUCG------CGC- -5'
33177 3' -57.5 NC_007497.1 + 6716 0.66 0.540419
Target:  5'- -uGUCGACgUCGUucucaaCGUCGAuGUGGCGCa -3'
miRNA:   3'- ggUAGCUG-AGCG------GCAGCU-CGUCGCGc -5'
33177 3' -57.5 NC_007497.1 + 6768 0.75 0.176558
Target:  5'- aCGUCGACaaCGCCGUCGgAGCGaauuugaaacucGCGCGa -3'
miRNA:   3'- gGUAGCUGa-GCGGCAGC-UCGU------------CGCGC- -5'
33177 3' -57.5 NC_007497.1 + 8681 0.69 0.393106
Target:  5'- gCGUCGGC-CGCCcgGUCGuGUGGCuGCGg -3'
miRNA:   3'- gGUAGCUGaGCGG--CAGCuCGUCG-CGC- -5'
33177 3' -57.5 NC_007497.1 + 12004 0.67 0.519481
Target:  5'- gCCGU-GACgaUUGCCG-CGAGCGGCGa- -3'
miRNA:   3'- -GGUAgCUG--AGCGGCaGCUCGUCGCgc -5'
33177 3' -57.5 NC_007497.1 + 13278 0.68 0.427081
Target:  5'- gCCGcuUCcGCUCGCCGcgaUgauguagacgacgaUGAGCAGCGCGa -3'
miRNA:   3'- -GGU--AGcUGAGCGGC---A--------------GCUCGUCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 13511 0.68 0.439424
Target:  5'- --uUCGGCuguUCGCCGUCu-GguGCGCGc -3'
miRNA:   3'- gguAGCUG---AGCGGCAGcuCguCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 14044 0.73 0.241791
Target:  5'- cCCAUCGACaUCGCCacgcucacgaagGUCGAGCGaaGCa -3'
miRNA:   3'- -GGUAGCUG-AGCGG------------CAGCUCGUcgCGc -5'
33177 3' -57.5 NC_007497.1 + 14201 0.7 0.325914
Target:  5'- gUCAUCGgcguucaugcGCUCGCCuUCGAGCAGgcCGCc -3'
miRNA:   3'- -GGUAGC----------UGAGCGGcAGCUCGUC--GCGc -5'
33177 3' -57.5 NC_007497.1 + 14372 0.66 0.561633
Target:  5'- gCCG-CGggccGCUCGCUGgCGAcGCAGUGCa -3'
miRNA:   3'- -GGUaGC----UGAGCGGCaGCU-CGUCGCGc -5'
33177 3' -57.5 NC_007497.1 + 14776 0.66 0.572326
Target:  5'- uCCGUCuGGCUUGCuCGUCGccgacugcucGGCGGCaaaugaccGCGg -3'
miRNA:   3'- -GGUAG-CUGAGCG-GCAGC----------UCGUCG--------CGC- -5'
33177 3' -57.5 NC_007497.1 + 14865 0.67 0.529912
Target:  5'- gCgGUC-AUUUGCCGcCGAGCAGUcgGCGa -3'
miRNA:   3'- -GgUAGcUGAGCGGCaGCUCGUCG--CGC- -5'
33177 3' -57.5 NC_007497.1 + 16415 0.72 0.254442
Target:  5'- ---aCGACguguccgaggUUGgCGUCGAGCAGCGCGu -3'
miRNA:   3'- gguaGCUG----------AGCgGCAGCUCGUCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 16761 0.69 0.38247
Target:  5'- aUCGUCGACcuuccuacgcgaCGCgGUcacgCGAGCGGCGCGc -3'
miRNA:   3'- -GGUAGCUGa-----------GCGgCA----GCUCGUCGCGC- -5'
33177 3' -57.5 NC_007497.1 + 19731 0.66 0.583068
Target:  5'- cCCAcuUCGGCaUGCCGUgCGGGCAucGgGCa -3'
miRNA:   3'- -GGU--AGCUGaGCGGCA-GCUCGU--CgCGc -5'
33177 3' -57.5 NC_007497.1 + 19902 0.74 0.201598
Target:  5'- gUCAUCGAgUcaggccagacCGUCGUgCGAGCAGCGUGg -3'
miRNA:   3'- -GGUAGCUgA----------GCGGCA-GCUCGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.