Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33177 | 3' | -57.5 | NC_007497.1 | + | 42154 | 1.09 | 0.000531 |
Target: 5'- gCCAUCGACUCGCCGUCGAGCAGCGCGc -3' miRNA: 3'- -GGUAGCUGAGCGGCAGCUCGUCGCGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 28678 | 0.68 | 0.458805 |
Target: 5'- -gAUCGugUCGCCGUaaaucAGCGGCaCGg -3' miRNA: 3'- ggUAGCugAGCGGCAgc---UCGUCGcGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 1056 | 0.67 | 0.492757 |
Target: 5'- gCA-CGACUUGCCacacgagcacggcagGUCacgagGGGCAGCGCGc -3' miRNA: 3'- gGUaGCUGAGCGG---------------CAG-----CUCGUCGCGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 12004 | 0.67 | 0.519481 |
Target: 5'- gCCGU-GACgaUUGCCG-CGAGCGGCGa- -3' miRNA: 3'- -GGUAgCUG--AGCGGCaGCUCGUCGCgc -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 37044 | 0.67 | 0.529912 |
Target: 5'- aCGUCGACgucacgaUGCCGUCGA-CGGcCGCc -3' miRNA: 3'- gGUAGCUGa------GCGGCAGCUcGUC-GCGc -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 6716 | 0.66 | 0.540419 |
Target: 5'- -uGUCGACgUCGUucucaaCGUCGAuGUGGCGCa -3' miRNA: 3'- ggUAGCUG-AGCG------GCAGCU-CGUCGCGc -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 36770 | 0.66 | 0.558435 |
Target: 5'- uCCGgcUCGACgccCGCCGccucgcgcagcggaUCGAGCcagaacGCGCGg -3' miRNA: 3'- -GGU--AGCUGa--GCGGC--------------AGCUCGu-----CGCGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 14776 | 0.66 | 0.572326 |
Target: 5'- uCCGUCuGGCUUGCuCGUCGccgacugcucGGCGGCaaaugaccGCGg -3' miRNA: 3'- -GGUAG-CUGAGCG-GCAGC----------UCGUCG--------CGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 29028 | 0.66 | 0.583068 |
Target: 5'- cCCGUUGuCgcgCGCC-UCGAGCAGaaauuuGCGg -3' miRNA: 3'- -GGUAGCuGa--GCGGcAGCUCGUCg-----CGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 31218 | 0.68 | 0.449057 |
Target: 5'- cCCcUUGACcugcagUGCCGUCGAGCcaucgucggaAGCGCc -3' miRNA: 3'- -GGuAGCUGa-----GCGGCAGCUCG----------UCGCGc -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 13511 | 0.68 | 0.439424 |
Target: 5'- --uUCGGCuguUCGCCGUCu-GguGCGCGc -3' miRNA: 3'- gguAGCUG---AGCGGCAGcuCguCGCGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 19902 | 0.74 | 0.201598 |
Target: 5'- gUCAUCGAgUcaggccagacCGUCGUgCGAGCAGCGUGg -3' miRNA: 3'- -GGUAGCUgA----------GCGGCA-GCUCGUCGCGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 14044 | 0.73 | 0.241791 |
Target: 5'- cCCAUCGACaUCGCCacgcucacgaagGUCGAGCGaaGCa -3' miRNA: 3'- -GGUAGCUG-AGCGG------------CAGCUCGUcgCGc -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 1234 | 0.72 | 0.274431 |
Target: 5'- aUCAUCGuuUCGCCGuacugcugcgUCGAGUacgccAGCGCGa -3' miRNA: 3'- -GGUAGCugAGCGGC----------AGCUCG-----UCGCGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 6062 | 0.72 | 0.274431 |
Target: 5'- gCCAucagcUCGAuaauCUCGCCGUcCGAGCAGUucuccgGCGa -3' miRNA: 3'- -GGU-----AGCU----GAGCGGCA-GCUCGUCG------CGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 28105 | 0.7 | 0.350077 |
Target: 5'- aCGUCGuCUUGCCGUCaaaGGCGccGCGCa -3' miRNA: 3'- gGUAGCuGAGCGGCAGc--UCGU--CGCGc -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 23594 | 0.69 | 0.38423 |
Target: 5'- uCC-UCaGCUCGCCGUuucaccagucCGGGCAGCacGCGg -3' miRNA: 3'- -GGuAGcUGAGCGGCA----------GCUCGUCG--CGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 33483 | 0.69 | 0.393106 |
Target: 5'- gCCAUCGugUCGUCGUaugcuuucUGAccCAGCGCa -3' miRNA: 3'- -GGUAGCugAGCGGCA--------GCUc-GUCGCGc -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 23502 | 0.69 | 0.393106 |
Target: 5'- aCGcCGGCgccCGCCGcCGcgcccAGCAGCGCGa -3' miRNA: 3'- gGUaGCUGa--GCGGCaGC-----UCGUCGCGC- -5' |
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33177 | 3' | -57.5 | NC_007497.1 | + | 30774 | 0.66 | 0.593848 |
Target: 5'- gCGUCGugUCGCgG-CGuagucGCGGCGUu -3' miRNA: 3'- gGUAGCugAGCGgCaGCu----CGUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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