Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33178 | 5' | -48.2 | NC_007497.1 | + | 98 | 0.67 | 0.937366 |
Target: 5'- -gUCgUCGCGCCuuCACAAca--ACCa -3' miRNA: 3'- gaAGgAGCGCGGuuGUGUUuuacUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 947 | 0.68 | 0.919369 |
Target: 5'- -aUCg-CGCGCCGuACGCGGuAAUGGCUg -3' miRNA: 3'- gaAGgaGCGCGGU-UGUGUU-UUACUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 1699 | 0.66 | 0.957021 |
Target: 5'- --cCUUCGUGCgCAGCACuccc-GGCCg -3' miRNA: 3'- gaaGGAGCGCG-GUUGUGuuuuaCUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 2108 | 0.69 | 0.875034 |
Target: 5'- cCUUCaUCGCGCCAGC-CuucccGUGACg -3' miRNA: 3'- -GAAGgAGCGCGGUUGuGuuu--UACUGg -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 2339 | 0.66 | 0.968656 |
Target: 5'- -aUCCgCGCGCCAucgguuucuuGCGCGGcuUGAauCCg -3' miRNA: 3'- gaAGGaGCGCGGU----------UGUGUUuuACU--GG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 2738 | 0.67 | 0.947804 |
Target: 5'- --aCCgagcuugaGCGC--ACGCAGAAUGGCCg -3' miRNA: 3'- gaaGGag------CGCGguUGUGUUUUACUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 2745 | 0.69 | 0.883172 |
Target: 5'- --aUCUCGCGCCG-CACG--GUGAUg -3' miRNA: 3'- gaaGGAGCGCGGUuGUGUuuUACUGg -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 3725 | 0.69 | 0.875034 |
Target: 5'- gUUCaUCGCGCCGGCcuuCAGuc-GACCg -3' miRNA: 3'- gAAGgAGCGCGGUUGu--GUUuuaCUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 3944 | 0.7 | 0.848945 |
Target: 5'- gUUCUUCGUGCCGGCGuCGAcccgcaucGGCCa -3' miRNA: 3'- gAAGGAGCGCGGUUGU-GUUuua-----CUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 4204 | 0.68 | 0.912744 |
Target: 5'- aUUCCg-GCGCCAugcGCACGAA---GCCg -3' miRNA: 3'- gAAGGagCGCGGU---UGUGUUUuacUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 5616 | 0.7 | 0.839721 |
Target: 5'- --gCCUCaacgaucaGCGUCAGCGCGuAcgGACCg -3' miRNA: 3'- gaaGGAG--------CGCGGUUGUGUuUuaCUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 6509 | 0.66 | 0.961185 |
Target: 5'- --cCCUCGCcCCAAUGCAGua-GAUCg -3' miRNA: 3'- gaaGGAGCGcGGUUGUGUUuuaCUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 11364 | 0.67 | 0.937366 |
Target: 5'- uUUCC-CG-GCCu-CACGAAuUGACCa -3' miRNA: 3'- gAAGGaGCgCGGuuGUGUUUuACUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 11567 | 0.68 | 0.925065 |
Target: 5'- --gCCUCGCGCgGcugaaguaaaagcGCGgGAAAUGGCg -3' miRNA: 3'- gaaGGAGCGCGgU-------------UGUgUUUUACUGg -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 14784 | 0.74 | 0.608453 |
Target: 5'- gCUUgCUCGuCGCCGACugcucgGCGgcAAAUGACCg -3' miRNA: 3'- -GAAgGAGC-GCGGUUG------UGU--UUUACUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 14879 | 0.7 | 0.839721 |
Target: 5'- -aUCgUCGcCGCCGACGCu-GAUG-CCg -3' miRNA: 3'- gaAGgAGC-GCGGUUGUGuuUUACuGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 15327 | 0.67 | 0.952563 |
Target: 5'- --gCCUCGCggcgcucgGCCGGCguccGCGGGAUGcGCCa -3' miRNA: 3'- gaaGGAGCG--------CGGUUG----UGUUUUAC-UGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 15505 | 0.7 | 0.830248 |
Target: 5'- gUUUCUCuGCGCCGcauaucGCGCAGGAgcgcugacaUGGCCu -3' miRNA: 3'- gAAGGAG-CGCGGU------UGUGUUUU---------ACUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 15996 | 0.67 | 0.931681 |
Target: 5'- -aUCCgugCGCGCCGAUA--AAccGGCCu -3' miRNA: 3'- gaAGGa--GCGCGGUUGUguUUuaCUGG- -5' |
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33178 | 5' | -48.2 | NC_007497.1 | + | 19355 | 0.68 | 0.919369 |
Target: 5'- --aCgUCGCGgCGcacugGCGCGAAAUGAUCu -3' miRNA: 3'- gaaGgAGCGCgGU-----UGUGUUUUACUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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