miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33178 5' -48.2 NC_007497.1 + 37149 0.66 0.961185
Target:  5'- gUUUCUCGcCGCUuGCACGGGccGugCg -3'
miRNA:   3'- gAAGGAGC-GCGGuUGUGUUUuaCugG- -5'
33178 5' -48.2 NC_007497.1 + 4204 0.68 0.912744
Target:  5'- aUUCCg-GCGCCAugcGCACGAA---GCCg -3'
miRNA:   3'- gAAGGagCGCGGU---UGUGUUUuacUGG- -5'
33178 5' -48.2 NC_007497.1 + 947 0.68 0.919369
Target:  5'- -aUCg-CGCGCCGuACGCGGuAAUGGCUg -3'
miRNA:   3'- gaAGgaGCGCGGU-UGUGUU-UUACUGG- -5'
33178 5' -48.2 NC_007497.1 + 11567 0.68 0.925065
Target:  5'- --gCCUCGCGCgGcugaaguaaaagcGCGgGAAAUGGCg -3'
miRNA:   3'- gaaGGAGCGCGgU-------------UGUgUUUUACUGg -5'
33178 5' -48.2 NC_007497.1 + 26036 0.68 0.925682
Target:  5'- uCUUCCgCGuCGCCGGCcauCGGAggcGUGAUCg -3'
miRNA:   3'- -GAAGGaGC-GCGGUUGu--GUUU---UACUGG- -5'
33178 5' -48.2 NC_007497.1 + 15996 0.67 0.931681
Target:  5'- -aUCCgugCGCGCCGAUA--AAccGGCCu -3'
miRNA:   3'- gaAGGa--GCGCGGUUGUguUUuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 98 0.67 0.937366
Target:  5'- -gUCgUCGCGCCuuCACAAca--ACCa -3'
miRNA:   3'- gaAGgAGCGCGGuuGUGUUuuacUGG- -5'
33178 5' -48.2 NC_007497.1 + 2738 0.67 0.947804
Target:  5'- --aCCgagcuugaGCGC--ACGCAGAAUGGCCg -3'
miRNA:   3'- gaaGGag------CGCGguUGUGUUUUACUGG- -5'
33178 5' -48.2 NC_007497.1 + 1699 0.66 0.957021
Target:  5'- --cCUUCGUGCgCAGCACuccc-GGCCg -3'
miRNA:   3'- gaaGGAGCGCG-GUUGUGuuuuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 35862 0.69 0.883172
Target:  5'- -gUCCU-GCGCgAcCGCAAAAUcGACCu -3'
miRNA:   3'- gaAGGAgCGCGgUuGUGUUUUA-CUGG- -5'
33178 5' -48.2 NC_007497.1 + 2108 0.69 0.875034
Target:  5'- cCUUCaUCGCGCCAGC-CuucccGUGACg -3'
miRNA:   3'- -GAAGgAGCGCGGUUGuGuuu--UACUGg -5'
33178 5' -48.2 NC_007497.1 + 34146 0.69 0.875034
Target:  5'- uUUCCUCGaCGCCGAgAUuuuc-GGCCu -3'
miRNA:   3'- gAAGGAGC-GCGGUUgUGuuuuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 14784 0.74 0.608453
Target:  5'- gCUUgCUCGuCGCCGACugcucgGCGgcAAAUGACCg -3'
miRNA:   3'- -GAAgGAGC-GCGGUUG------UGU--UUUACUGG- -5'
33178 5' -48.2 NC_007497.1 + 32811 0.7 0.817582
Target:  5'- ---gCUCGCGCCAACACGccaaucgcgcugcaAcGUGAgCCg -3'
miRNA:   3'- gaagGAGCGCGGUUGUGU--------------UuUACU-GG- -5'
33178 5' -48.2 NC_007497.1 + 15505 0.7 0.830248
Target:  5'- gUUUCUCuGCGCCGcauaucGCGCAGGAgcgcugacaUGGCCu -3'
miRNA:   3'- gAAGGAG-CGCGGU------UGUGUUUU---------ACUGG- -5'
33178 5' -48.2 NC_007497.1 + 5616 0.7 0.839721
Target:  5'- --gCCUCaacgaucaGCGUCAGCGCGuAcgGACCg -3'
miRNA:   3'- gaaGGAG--------CGCGGUUGUGUuUuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 14879 0.7 0.839721
Target:  5'- -aUCgUCGcCGCCGACGCu-GAUG-CCg -3'
miRNA:   3'- gaAGgAGC-GCGGUUGUGuuUUACuGG- -5'
33178 5' -48.2 NC_007497.1 + 3944 0.7 0.848945
Target:  5'- gUUCUUCGUGCCGGCGuCGAcccgcaucGGCCa -3'
miRNA:   3'- gAAGGAGCGCGGUUGU-GUUuua-----CUGG- -5'
33178 5' -48.2 NC_007497.1 + 40916 0.69 0.857912
Target:  5'- -aUCCgUCGCcgGCCAuCGCGA--UGACCg -3'
miRNA:   3'- gaAGG-AGCG--CGGUuGUGUUuuACUGG- -5'
33178 5' -48.2 NC_007497.1 + 3725 0.69 0.875034
Target:  5'- gUUCaUCGCGCCGGCcuuCAGuc-GACCg -3'
miRNA:   3'- gAAGgAGCGCGGUUGu--GUUuuaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.