miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33180 5' -48.1 NC_007501.1 + 32260 0.66 0.909315
Target:  5'- cUCCgAGCC-UCAGUGAugauaaaGCUg--UGGCa -3'
miRNA:   3'- aAGG-UCGGuAGUCAUU-------UGAagaACCG- -5'
33180 5' -48.1 NC_007501.1 + 18364 0.67 0.870118
Target:  5'- -gCCAG-CAUCAG-GAACgaCUUGGCc -3'
miRNA:   3'- aaGGUCgGUAGUCaUUUGaaGAACCG- -5'
33180 5' -48.1 NC_007501.1 + 10761 0.69 0.801935
Target:  5'- -gCCAGCUAaUAGUuGGCUagguggUCUUGGCu -3'
miRNA:   3'- aaGGUCGGUaGUCAuUUGA------AGAACCG- -5'
33180 5' -48.1 NC_007501.1 + 24273 0.71 0.675416
Target:  5'- aUUCCAGaCCAUaagaAGUGGGCUgaUCUUgcGGCg -3'
miRNA:   3'- -AAGGUC-GGUAg---UCAUUUGA--AGAA--CCG- -5'
33180 5' -48.1 NC_007501.1 + 6492 0.71 0.66331
Target:  5'- -aCCAGCC-UUAGUAAuCUucUCUUGGUc -3'
miRNA:   3'- aaGGUCGGuAGUCAUUuGA--AGAACCG- -5'
33180 5' -48.1 NC_007501.1 + 10784 1.12 0.001716
Target:  5'- aUUCCAGCCAUCAGUAAACUUCUUGGCg -3'
miRNA:   3'- -AAGGUCGGUAGUCAUUUGAAGAACCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.