miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33264 5' -59.3 NC_007605.1 + 121720 0.67 0.704097
Target:  5'- gAGCUccaggacUCUGCCacgGCCAGCAGgccaCCUGUg -3'
miRNA:   3'- gUCGAc------AGACGG---UGGUCGUCg---GGACG- -5'
33264 5' -59.3 NC_007605.1 + 134876 0.67 0.704097
Target:  5'- uCAGCuUGgg-GCCACCggggaggccaGGUAGCCCaGCg -3'
miRNA:   3'- -GUCG-ACagaCGGUGG----------UCGUCGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 52619 0.67 0.694171
Target:  5'- gCAGCguaggccggaUGUgUGCCgACCAGCAGCgCCa-- -3'
miRNA:   3'- -GUCG----------ACAgACGG-UGGUCGUCG-GGacg -5'
33264 5' -59.3 NC_007605.1 + 58398 0.67 0.684194
Target:  5'- ------cCUGCCGCCAGguaUAGUCCUGCa -3'
miRNA:   3'- gucgacaGACGGUGGUC---GUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 150281 0.67 0.684194
Target:  5'- aCAGCc-UCcGCCGCCuGCGGCCCa-- -3'
miRNA:   3'- -GUCGacAGaCGGUGGuCGUCGGGacg -5'
33264 5' -59.3 NC_007605.1 + 62747 0.67 0.674176
Target:  5'- gCAGCU-UCggccucgGCCAUCuggaGGCGGCCCUGg -3'
miRNA:   3'- -GUCGAcAGa------CGGUGG----UCGUCGGGACg -5'
33264 5' -59.3 NC_007605.1 + 114811 0.68 0.664124
Target:  5'- gGGCUGguuggggCUGCUucccaGCUAGUAGCCCUu- -3'
miRNA:   3'- gUCGACa------GACGG-----UGGUCGUCGGGAcg -5'
33264 5' -59.3 NC_007605.1 + 3182 0.68 0.654047
Target:  5'- gGGCcGUCUGCa--CGGCcGCCUUGCc -3'
miRNA:   3'- gUCGaCAGACGgugGUCGuCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 65739 0.68 0.654047
Target:  5'- cCAGCccagGUCcGCaaagaCAUCGGCcaGGCCCUGCa -3'
miRNA:   3'- -GUCGa---CAGaCG-----GUGGUCG--UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 121295 0.68 0.653038
Target:  5'- gUAGUgauugCUGgCACUgacguguuucuggAGCAGCCCUGCa -3'
miRNA:   3'- -GUCGaca--GACgGUGG-------------UCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 112808 0.68 0.643952
Target:  5'- uCGGg-GUCUcGgCACCcaGGCAGCCUUGCg -3'
miRNA:   3'- -GUCgaCAGA-CgGUGG--UCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 162033 0.68 0.633849
Target:  5'- aGGCa----GCCGCCGGCcguacacccGGCCCUGCa -3'
miRNA:   3'- gUCGacagaCGGUGGUCG---------UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 136903 0.68 0.623744
Target:  5'- gAGUcGgauaCUGCCcCCAGCAGggcCCCUGCu -3'
miRNA:   3'- gUCGaCa---GACGGuGGUCGUC---GGGACG- -5'
33264 5' -59.3 NC_007605.1 + 75162 0.68 0.623744
Target:  5'- aGGCUGUC-GCCAgccuguuuguCCAGCAggGCCUUGa -3'
miRNA:   3'- gUCGACAGaCGGU----------GGUCGU--CGGGACg -5'
33264 5' -59.3 NC_007605.1 + 162263 0.69 0.603561
Target:  5'- -uGCgacCUGCCagACCuggacGCGGCCCUGCa -3'
miRNA:   3'- guCGacaGACGG--UGGu----CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 2518 0.69 0.603561
Target:  5'- uCAGCgGUCUcuggcccgGCCACCAGaagGGCCCUc- -3'
miRNA:   3'- -GUCGaCAGA--------CGGUGGUCg--UCGGGAcg -5'
33264 5' -59.3 NC_007605.1 + 134715 0.69 0.593497
Target:  5'- gCAGCUGUgUGCgCGCCgccagcauGGCAGCCggGUc -3'
miRNA:   3'- -GUCGACAgACG-GUGG--------UCGUCGGgaCG- -5'
33264 5' -59.3 NC_007605.1 + 1905 0.69 0.593497
Target:  5'- -uGCUGagaacCUGCUGCUAGUGGCgCUGCg -3'
miRNA:   3'- guCGACa----GACGGUGGUCGUCGgGACG- -5'
33264 5' -59.3 NC_007605.1 + 145648 0.69 0.58346
Target:  5'- -uGCUG-CUGCCAaauCCAGCc-CCCUGUg -3'
miRNA:   3'- guCGACaGACGGU---GGUCGucGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 55537 0.69 0.58346
Target:  5'- cCGGCUGacgCUGgaGCCAGCgcgccuaguGGCCUUGCa -3'
miRNA:   3'- -GUCGACa--GACggUGGUCG---------UCGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.