miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33264 5' -59.3 NC_007605.1 + 55537 0.69 0.58346
Target:  5'- cCGGCUGacgCUGgaGCCAGCgcgccuaguGGCCUUGCa -3'
miRNA:   3'- -GUCGACa--GACggUGGUCG---------UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 56386 0.66 0.752663
Target:  5'- uGGCcGUCcgGuCCAagaauGCGGCCCUGCa -3'
miRNA:   3'- gUCGaCAGa-C-GGUggu--CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 58398 0.67 0.684194
Target:  5'- ------cCUGCCGCCAGguaUAGUCCUGCa -3'
miRNA:   3'- gucgacaGACGGUGGUC---GUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 62747 0.67 0.674176
Target:  5'- gCAGCU-UCggccucgGCCAUCuggaGGCGGCCCUGg -3'
miRNA:   3'- -GUCGAcAGa------CGGUGG----UCGUCGGGACg -5'
33264 5' -59.3 NC_007605.1 + 62938 0.69 0.553581
Target:  5'- gGGCUG-CUGCCcCCucCGGCCCgGCg -3'
miRNA:   3'- gUCGACaGACGGuGGucGUCGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 63272 0.74 0.304841
Target:  5'- cCGGCga-CcGCCaccucccccgggGCCAGCAGCCCUGCg -3'
miRNA:   3'- -GUCGacaGaCGG------------UGGUCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 63597 0.76 0.253141
Target:  5'- gCGGCgGUCgGCCACCAGCcGCCCa-- -3'
miRNA:   3'- -GUCGaCAGaCGGUGGUCGuCGGGacg -5'
33264 5' -59.3 NC_007605.1 + 63640 0.69 0.553581
Target:  5'- gGGCUGg--GCCugCAGCcguGCCCcGCc -3'
miRNA:   3'- gUCGACagaCGGugGUCGu--CGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 64326 0.7 0.543718
Target:  5'- cCAGCg----GCUACCuGuCGGCCCUGCg -3'
miRNA:   3'- -GUCGacagaCGGUGGuC-GUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 64425 0.66 0.732516
Target:  5'- cCGGCuucUGUgccucaaccacCUGCCuCUacgcgggucucagGGCAGCCCUGCa -3'
miRNA:   3'- -GUCG---ACA-----------GACGGuGG-------------UCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 65739 0.68 0.654047
Target:  5'- cCAGCccagGUCcGCaaagaCAUCGGCcaGGCCCUGCa -3'
miRNA:   3'- -GUCGa---CAGaCG-----GUGGUCG--UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 68469 0.66 0.780632
Target:  5'- aAGCg--CcGCCGCCAGCgAGuCCgCUGCu -3'
miRNA:   3'- gUCGacaGaCGGUGGUCG-UC-GG-GACG- -5'
33264 5' -59.3 NC_007605.1 + 73226 0.66 0.772353
Target:  5'- -uGcCUGUCUGCaaaauggcagaggaaGaCCGGUAGCCgCUGCa -3'
miRNA:   3'- guC-GACAGACGg--------------U-GGUCGUCGG-GACG- -5'
33264 5' -59.3 NC_007605.1 + 74291 0.67 0.713964
Target:  5'- gCAGC-GUCagaaccagGCCG-CAGCGGCUCUGUg -3'
miRNA:   3'- -GUCGaCAGa-------CGGUgGUCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 75162 0.68 0.623744
Target:  5'- aGGCUGUC-GCCAgccuguuuguCCAGCAggGCCUUGa -3'
miRNA:   3'- gUCGACAGaCGGU----------GGUCGU--CGGGACg -5'
33264 5' -59.3 NC_007605.1 + 75776 0.66 0.765845
Target:  5'- uGGCagGUCggGCCugGCCAuGCaggguauucuagugaAGCCCUGCa -3'
miRNA:   3'- gUCGa-CAGa-CGG--UGGU-CG---------------UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 94638 0.74 0.304841
Target:  5'- uCAGUggucauuggaUGUCUGCCACgGGCAaccCCCUGCc -3'
miRNA:   3'- -GUCG----------ACAGACGGUGgUCGUc--GGGACG- -5'
33264 5' -59.3 NC_007605.1 + 109007 0.8 0.136602
Target:  5'- aGGCUGUCUGCCACCAggucaugaccGgGGCCCaguuUGCg -3'
miRNA:   3'- gUCGACAGACGGUGGU----------CgUCGGG----ACG- -5'
33264 5' -59.3 NC_007605.1 + 112808 0.68 0.643952
Target:  5'- uCGGg-GUCUcGgCACCcaGGCAGCCUUGCg -3'
miRNA:   3'- -GUCgaCAGA-CgGUGG--UCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 113939 0.7 0.49538
Target:  5'- uGGCaccuguccuUGUCUGCUGCCAuGCAcgGCCCUGa -3'
miRNA:   3'- gUCG---------ACAGACGGUGGU-CGU--CGGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.