miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33264 5' -59.3 NC_007605.1 + 1905 0.69 0.593497
Target:  5'- -uGCUGagaacCUGCUGCUAGUGGCgCUGCg -3'
miRNA:   3'- guCGACa----GACGGUGGUCGUCGgGACG- -5'
33264 5' -59.3 NC_007605.1 + 2518 0.69 0.603561
Target:  5'- uCAGCgGUCUcuggcccgGCCACCAGaagGGCCCUc- -3'
miRNA:   3'- -GUCGaCAGA--------CGGUGGUCg--UCGGGAcg -5'
33264 5' -59.3 NC_007605.1 + 2589 1.1 0.001135
Target:  5'- cCAGCUGUCUGCCACCAGCAGCCCUGCc -3'
miRNA:   3'- -GUCGACAGACGGUGGUCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 2591 0.7 0.533914
Target:  5'- aCAGCUGUUuaUGagaCGCCAGCAcCCCgGCc -3'
miRNA:   3'- -GUCGACAG--ACg--GUGGUCGUcGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 3182 0.68 0.654047
Target:  5'- gGGCcGUCUGCa--CGGCcGCCUUGCc -3'
miRNA:   3'- gUCGaCAGACGgugGUCGuCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 13268 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 16337 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 19406 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 22475 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 25544 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 28613 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 31682 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 34751 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 38919 0.67 0.723763
Target:  5'- gCAGCgggCgGCCGCCGGUggguccgcugGGCCgCUGCc -3'
miRNA:   3'- -GUCGacaGaCGGUGGUCG----------UCGG-GACG- -5'
33264 5' -59.3 NC_007605.1 + 40294 0.69 0.573458
Target:  5'- gCGGCcGa--GCCACCAGgGGCCCgGCg -3'
miRNA:   3'- -GUCGaCagaCGGUGGUCgUCGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 47514 0.71 0.485941
Target:  5'- -uGCUGgCUGUCACgGccGUGGCCCUGCu -3'
miRNA:   3'- guCGACaGACGGUGgU--CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 48751 0.75 0.284555
Target:  5'- -uGCUGacCUGCCauGCCAGCGGCCgUGUg -3'
miRNA:   3'- guCGACa-GACGG--UGGUCGUCGGgACG- -5'
33264 5' -59.3 NC_007605.1 + 48819 0.66 0.752663
Target:  5'- aGGCUGgCUgaGCCACCgAGC-GCCC-GCu -3'
miRNA:   3'- gUCGACaGA--CGGUGG-UCGuCGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 50627 0.7 0.524173
Target:  5'- aGGCUG-CUG-CGCCGGCGGCCaccacggGCg -3'
miRNA:   3'- gUCGACaGACgGUGGUCGUCGGga-----CG- -5'
33264 5' -59.3 NC_007605.1 + 52619 0.67 0.694171
Target:  5'- gCAGCguaggccggaUGUgUGCCgACCAGCAGCgCCa-- -3'
miRNA:   3'- -GUCG----------ACAgACGG-UGGUCGUCG-GGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.