miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33264 5' -59.3 NC_007605.1 + 38919 0.67 0.723763
Target:  5'- gCAGCgggCgGCCGCCGGUggguccgcugGGCCgCUGCc -3'
miRNA:   3'- -GUCGacaGaCGGUGGUCG----------UCGG-GACG- -5'
33264 5' -59.3 NC_007605.1 + 40294 0.69 0.573458
Target:  5'- gCGGCcGa--GCCACCAGgGGCCCgGCg -3'
miRNA:   3'- -GUCGaCagaCGGUGGUCgUCGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 1905 0.69 0.593497
Target:  5'- -uGCUGagaacCUGCUGCUAGUGGCgCUGCg -3'
miRNA:   3'- guCGACa----GACGGUGGUCGUCGgGACG- -5'
33264 5' -59.3 NC_007605.1 + 136903 0.68 0.623744
Target:  5'- gAGUcGgauaCUGCCcCCAGCAGggcCCCUGCu -3'
miRNA:   3'- gUCGaCa---GACGGuGGUCGUC---GGGACG- -5'
33264 5' -59.3 NC_007605.1 + 162033 0.68 0.633849
Target:  5'- aGGCa----GCCGCCGGCcguacacccGGCCCUGCa -3'
miRNA:   3'- gUCGacagaCGGUGGUCG---------UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 52619 0.67 0.694171
Target:  5'- gCAGCguaggccggaUGUgUGCCgACCAGCAGCgCCa-- -3'
miRNA:   3'- -GUCG----------ACAgACGG-UGGUCGUCG-GGacg -5'
33264 5' -59.3 NC_007605.1 + 74291 0.67 0.713964
Target:  5'- gCAGC-GUCagaaccagGCCG-CAGCGGCUCUGUg -3'
miRNA:   3'- -GUCGaCAGa-------CGGUgGUCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 151112 0.67 0.713964
Target:  5'- -cGCaGcCUGCCcCuCGGCGGCCCgUGCc -3'
miRNA:   3'- guCGaCaGACGGuG-GUCGUCGGG-ACG- -5'
33264 5' -59.3 NC_007605.1 + 154129 0.67 0.723763
Target:  5'- uGGCgcgGauccUCgcagGCCGCCAGCagcuucuugauGGCCUUGCg -3'
miRNA:   3'- gUCGa--C----AGa---CGGUGGUCG-----------UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 63640 0.69 0.553581
Target:  5'- gGGCUGg--GCCugCAGCcguGCCCcGCc -3'
miRNA:   3'- gUCGACagaCGGugGUCGu--CGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 62938 0.69 0.553581
Target:  5'- gGGCUG-CUGCCcCCucCGGCCCgGCg -3'
miRNA:   3'- gUCGACaGACGGuGGucGUCGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 64326 0.7 0.543718
Target:  5'- cCAGCg----GCUACCuGuCGGCCCUGCg -3'
miRNA:   3'- -GUCGacagaCGGUGGuC-GUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 160716 0.79 0.167213
Target:  5'- uGGCUGUaCgccGCCGCCAGCAGCCCc-- -3'
miRNA:   3'- gUCGACA-Ga--CGGUGGUCGUCGGGacg -5'
33264 5' -59.3 NC_007605.1 + 160798 0.77 0.219272
Target:  5'- aCGGCgcuugcGUCUGCCcCCGG-AGCCCUGCc -3'
miRNA:   3'- -GUCGa-----CAGACGGuGGUCgUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 48751 0.75 0.284555
Target:  5'- -uGCUGacCUGCCauGCCAGCGGCCgUGUg -3'
miRNA:   3'- guCGACa-GACGG--UGGUCGUCGGgACG- -5'
33264 5' -59.3 NC_007605.1 + 94638 0.74 0.304841
Target:  5'- uCAGUggucauuggaUGUCUGCCACgGGCAaccCCCUGCc -3'
miRNA:   3'- -GUCG----------ACAGACGGUGgUCGUc--GGGACG- -5'
33264 5' -59.3 NC_007605.1 + 155870 0.73 0.348687
Target:  5'- uGGgUGUCUGCCuCCGGCcuuGCCgUGCc -3'
miRNA:   3'- gUCgACAGACGGuGGUCGu--CGGgACG- -5'
33264 5' -59.3 NC_007605.1 + 47514 0.71 0.485941
Target:  5'- -uGCUGgCUGUCACgGccGUGGCCCUGCu -3'
miRNA:   3'- guCGACaGACGGUGgU--CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 50627 0.7 0.524173
Target:  5'- aGGCUG-CUG-CGCCGGCGGCCaccacggGCg -3'
miRNA:   3'- gUCGACaGACgGUGGUCGUCGGga-----CG- -5'
33264 5' -59.3 NC_007605.1 + 2591 0.7 0.533914
Target:  5'- aCAGCUGUUuaUGagaCGCCAGCAcCCCgGCc -3'
miRNA:   3'- -GUCGACAG--ACg--GUGGUCGUcGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.