miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33264 5' -59.3 NC_007605.1 + 2589 1.1 0.001135
Target:  5'- cCAGCUGUCUGCCACCAGCAGCCCUGCc -3'
miRNA:   3'- -GUCGACAGACGGUGGUCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 3182 0.68 0.654047
Target:  5'- gGGCcGUCUGCa--CGGCcGCCUUGCc -3'
miRNA:   3'- gUCGaCAGACGgugGUCGuCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 114811 0.68 0.664124
Target:  5'- gGGCUGguuggggCUGCUucccaGCUAGUAGCCCUu- -3'
miRNA:   3'- gUCGACa------GACGG-----UGGUCGUCGGGAcg -5'
33264 5' -59.3 NC_007605.1 + 68469 0.66 0.780632
Target:  5'- aAGCg--CcGCCGCCAGCgAGuCCgCUGCu -3'
miRNA:   3'- gUCGacaGaCGGUGGUCG-UC-GG-GACG- -5'
33264 5' -59.3 NC_007605.1 + 159022 0.73 0.38853
Target:  5'- -cGCgGUCaGCC-CCGGCcaGGCCCUGCc -3'
miRNA:   3'- guCGaCAGaCGGuGGUCG--UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 130342 0.72 0.39685
Target:  5'- uCAGCUGcgCUGUCACUugucuuauGUGGCCCUGUc -3'
miRNA:   3'- -GUCGACa-GACGGUGGu-------CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 167000 0.7 0.533914
Target:  5'- gCAGCaGUCcucUGCCugCGGCcuGCCCgGCu -3'
miRNA:   3'- -GUCGaCAG---ACGGugGUCGu-CGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 115726 0.7 0.543718
Target:  5'- cCAGgaGUCUGCUgcgGCUAuGCAGCCCa-- -3'
miRNA:   3'- -GUCgaCAGACGG---UGGU-CGUCGGGacg -5'
33264 5' -59.3 NC_007605.1 + 134715 0.69 0.593497
Target:  5'- gCAGCUGUgUGCgCGCCgccagcauGGCAGCCggGUc -3'
miRNA:   3'- -GUCGACAgACG-GUGG--------UCGUCGGgaCG- -5'
33264 5' -59.3 NC_007605.1 + 121295 0.68 0.653038
Target:  5'- gUAGUgauugCUGgCACUgacguguuucuggAGCAGCCCUGCa -3'
miRNA:   3'- -GUCGaca--GACgGUGG-------------UCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 162263 0.69 0.603561
Target:  5'- -uGCgacCUGCCagACCuggacGCGGCCCUGCa -3'
miRNA:   3'- guCGacaGACGG--UGGu----CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 55537 0.69 0.58346
Target:  5'- cCGGCUGacgCUGgaGCCAGCgcgccuaguGGCCUUGCa -3'
miRNA:   3'- -GUCGACa--GACggUGGUCG---------UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 63597 0.76 0.253141
Target:  5'- gCGGCgGUCgGCCACCAGCcGCCCa-- -3'
miRNA:   3'- -GUCGaCAGaCGGUGGUCGuCGGGacg -5'
33264 5' -59.3 NC_007605.1 + 75162 0.68 0.623744
Target:  5'- aGGCUGUC-GCCAgccuguuuguCCAGCAggGCCUUGa -3'
miRNA:   3'- gUCGACAGaCGGU----------GGUCGU--CGGGACg -5'
33264 5' -59.3 NC_007605.1 + 63272 0.74 0.304841
Target:  5'- cCGGCga-CcGCCaccucccccgggGCCAGCAGCCCUGCg -3'
miRNA:   3'- -GUCGacaGaCGG------------UGGUCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 145648 0.69 0.58346
Target:  5'- -uGCUG-CUGCCAaauCCAGCc-CCCUGUg -3'
miRNA:   3'- guCGACaGACGGU---GGUCGucGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 112808 0.68 0.643952
Target:  5'- uCGGg-GUCUcGgCACCcaGGCAGCCUUGCg -3'
miRNA:   3'- -GUCgaCAGA-CgGUGG--UCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 65739 0.68 0.654047
Target:  5'- cCAGCccagGUCcGCaaagaCAUCGGCcaGGCCCUGCa -3'
miRNA:   3'- -GUCGa---CAGaCG-----GUGGUCG--UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 158856 0.73 0.380326
Target:  5'- aAGCgUGUCgUGCUGCUAGCcGCCCUGg -3'
miRNA:   3'- gUCG-ACAG-ACGGUGGUCGuCGGGACg -5'
33264 5' -59.3 NC_007605.1 + 113939 0.7 0.49538
Target:  5'- uGGCaccuguccuUGUCUGCUGCCAuGCAcgGCCCUGa -3'
miRNA:   3'- gUCG---------ACAGACGGUGGU-CGU--CGGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.