miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33264 5' -59.3 NC_007605.1 + 2589 1.1 0.001135
Target:  5'- cCAGCUGUCUGCCACCAGCAGCCCUGCc -3'
miRNA:   3'- -GUCGACAGACGGUGGUCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 109007 0.8 0.136602
Target:  5'- aGGCUGUCUGCCACCAggucaugaccGgGGCCCaguuUGCg -3'
miRNA:   3'- gUCGACAGACGGUGGU----------CgUCGGG----ACG- -5'
33264 5' -59.3 NC_007605.1 + 160716 0.79 0.167213
Target:  5'- uGGCUGUaCgccGCCGCCAGCAGCCCc-- -3'
miRNA:   3'- gUCGACA-Ga--CGGUGGUCGUCGGGacg -5'
33264 5' -59.3 NC_007605.1 + 160798 0.77 0.219272
Target:  5'- aCGGCgcuugcGUCUGCCcCCGG-AGCCCUGCc -3'
miRNA:   3'- -GUCGa-----CAGACGGuGGUCgUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 63597 0.76 0.253141
Target:  5'- gCGGCgGUCgGCCACCAGCcGCCCa-- -3'
miRNA:   3'- -GUCGaCAGaCGGUGGUCGuCGGGacg -5'
33264 5' -59.3 NC_007605.1 + 48751 0.75 0.284555
Target:  5'- -uGCUGacCUGCCauGCCAGCGGCCgUGUg -3'
miRNA:   3'- guCGACa-GACGG--UGGUCGUCGGgACG- -5'
33264 5' -59.3 NC_007605.1 + 94638 0.74 0.304841
Target:  5'- uCAGUggucauuggaUGUCUGCCACgGGCAaccCCCUGCc -3'
miRNA:   3'- -GUCG----------ACAGACGGUGgUCGUc--GGGACG- -5'
33264 5' -59.3 NC_007605.1 + 63272 0.74 0.304841
Target:  5'- cCGGCga-CcGCCaccucccccgggGCCAGCAGCCCUGCg -3'
miRNA:   3'- -GUCGacaGaCGG------------UGGUCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 155870 0.73 0.348687
Target:  5'- uGGgUGUCUGCCuCCGGCcuuGCCgUGCc -3'
miRNA:   3'- gUCgACAGACGGuGGUCGu--CGGgACG- -5'
33264 5' -59.3 NC_007605.1 + 158856 0.73 0.380326
Target:  5'- aAGCgUGUCgUGCUGCUAGCcGCCCUGg -3'
miRNA:   3'- gUCG-ACAG-ACGGUGGUCGuCGGGACg -5'
33264 5' -59.3 NC_007605.1 + 159022 0.73 0.38853
Target:  5'- -cGCgGUCaGCC-CCGGCcaGGCCCUGCc -3'
miRNA:   3'- guCGaCAGaCGGuGGUCG--UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 130342 0.72 0.39685
Target:  5'- uCAGCUGcgCUGUCACUugucuuauGUGGCCCUGUc -3'
miRNA:   3'- -GUCGACa-GACGGUGGu-------CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 47514 0.71 0.485941
Target:  5'- -uGCUGgCUGUCACgGccGUGGCCCUGCu -3'
miRNA:   3'- guCGACaGACGGUGgU--CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 113939 0.7 0.49538
Target:  5'- uGGCaccuguccuUGUCUGCUGCCAuGCAcgGCCCUGa -3'
miRNA:   3'- gUCG---------ACAGACGGUGGU-CGU--CGGGACg -5'
33264 5' -59.3 NC_007605.1 + 50627 0.7 0.524173
Target:  5'- aGGCUG-CUG-CGCCGGCGGCCaccacggGCg -3'
miRNA:   3'- gUCGACaGACgGUGGUCGUCGGga-----CG- -5'
33264 5' -59.3 NC_007605.1 + 167000 0.7 0.533914
Target:  5'- gCAGCaGUCcucUGCCugCGGCcuGCCCgGCu -3'
miRNA:   3'- -GUCGaCAG---ACGGugGUCGu-CGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 2591 0.7 0.533914
Target:  5'- aCAGCUGUUuaUGagaCGCCAGCAcCCCgGCc -3'
miRNA:   3'- -GUCGACAG--ACg--GUGGUCGUcGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 115726 0.7 0.543718
Target:  5'- cCAGgaGUCUGCUgcgGCUAuGCAGCCCa-- -3'
miRNA:   3'- -GUCgaCAGACGG---UGGU-CGUCGGGacg -5'
33264 5' -59.3 NC_007605.1 + 64326 0.7 0.543718
Target:  5'- cCAGCg----GCUACCuGuCGGCCCUGCg -3'
miRNA:   3'- -GUCGacagaCGGUGGuC-GUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 62938 0.69 0.553581
Target:  5'- gGGCUG-CUGCCcCCucCGGCCCgGCg -3'
miRNA:   3'- gUCGACaGACGGuGGucGUCGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.