miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33264 5' -59.3 NC_007605.1 + 167000 0.7 0.533914
Target:  5'- gCAGCaGUCcucUGCCugCGGCcuGCCCgGCu -3'
miRNA:   3'- -GUCGaCAG---ACGGugGUCGu-CGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 162263 0.69 0.603561
Target:  5'- -uGCgacCUGCCagACCuggacGCGGCCCUGCa -3'
miRNA:   3'- guCGacaGACGG--UGGu----CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 162033 0.68 0.633849
Target:  5'- aGGCa----GCCGCCGGCcguacacccGGCCCUGCa -3'
miRNA:   3'- gUCGacagaCGGUGGUCG---------UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 160798 0.77 0.219272
Target:  5'- aCGGCgcuugcGUCUGCCcCCGG-AGCCCUGCc -3'
miRNA:   3'- -GUCGa-----CAGACGGuGGUCgUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 160716 0.79 0.167213
Target:  5'- uGGCUGUaCgccGCCGCCAGCAGCCCc-- -3'
miRNA:   3'- gUCGACA-Ga--CGGUGGUCGUCGGGacg -5'
33264 5' -59.3 NC_007605.1 + 159022 0.73 0.38853
Target:  5'- -cGCgGUCaGCC-CCGGCcaGGCCCUGCc -3'
miRNA:   3'- guCGaCAGaCGGuGGUCG--UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 158856 0.73 0.380326
Target:  5'- aAGCgUGUCgUGCUGCUAGCcGCCCUGg -3'
miRNA:   3'- gUCG-ACAG-ACGGUGGUCGuCGGGACg -5'
33264 5' -59.3 NC_007605.1 + 155870 0.73 0.348687
Target:  5'- uGGgUGUCUGCCuCCGGCcuuGCCgUGCc -3'
miRNA:   3'- gUCgACAGACGGuGGUCGu--CGGgACG- -5'
33264 5' -59.3 NC_007605.1 + 154129 0.67 0.723763
Target:  5'- uGGCgcgGauccUCgcagGCCGCCAGCagcuucuugauGGCCUUGCg -3'
miRNA:   3'- gUCGa--C----AGa---CGGUGGUCG-----------UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 152092 0.67 0.71298
Target:  5'- aAGCcGgCUGCUACCuacuggcGGCAGUCCUGa -3'
miRNA:   3'- gUCGaCaGACGGUGG-------UCGUCGGGACg -5'
33264 5' -59.3 NC_007605.1 + 151112 0.67 0.713964
Target:  5'- -cGCaGcCUGCCcCuCGGCGGCCCgUGCc -3'
miRNA:   3'- guCGaCaGACGGuG-GUCGUCGGG-ACG- -5'
33264 5' -59.3 NC_007605.1 + 150281 0.67 0.684194
Target:  5'- aCAGCc-UCcGCCGCCuGCGGCCCa-- -3'
miRNA:   3'- -GUCGacAGaCGGUGGuCGUCGGGacg -5'
33264 5' -59.3 NC_007605.1 + 145648 0.69 0.58346
Target:  5'- -uGCUG-CUGCCAaauCCAGCc-CCCUGUg -3'
miRNA:   3'- guCGACaGACGGU---GGUCGucGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 136903 0.68 0.623744
Target:  5'- gAGUcGgauaCUGCCcCCAGCAGggcCCCUGCu -3'
miRNA:   3'- gUCGaCa---GACGGuGGUCGUC---GGGACG- -5'
33264 5' -59.3 NC_007605.1 + 134876 0.67 0.704097
Target:  5'- uCAGCuUGgg-GCCACCggggaggccaGGUAGCCCaGCg -3'
miRNA:   3'- -GUCG-ACagaCGGUGG----------UCGUCGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 134715 0.69 0.593497
Target:  5'- gCAGCUGUgUGCgCGCCgccagcauGGCAGCCggGUc -3'
miRNA:   3'- -GUCGACAgACG-GUGG--------UCGUCGGgaCG- -5'
33264 5' -59.3 NC_007605.1 + 130342 0.72 0.39685
Target:  5'- uCAGCUGcgCUGUCACUugucuuauGUGGCCCUGUc -3'
miRNA:   3'- -GUCGACa-GACGGUGGu-------CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 121720 0.67 0.704097
Target:  5'- gAGCUccaggacUCUGCCacgGCCAGCAGgccaCCUGUg -3'
miRNA:   3'- gUCGAc------AGACGG---UGGUCGUCg---GGACG- -5'
33264 5' -59.3 NC_007605.1 + 121295 0.68 0.653038
Target:  5'- gUAGUgauugCUGgCACUgacguguuucuggAGCAGCCCUGCa -3'
miRNA:   3'- -GUCGaca--GACgGUGG-------------UCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 115726 0.7 0.543718
Target:  5'- cCAGgaGUCUGCUgcgGCUAuGCAGCCCa-- -3'
miRNA:   3'- -GUCgaCAGACGG---UGGU-CGUCGGGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.