miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 3' -56.1 NC_007605.1 + 50417 0.66 0.921946
Target:  5'- uUGG-CaCGGGCCUGGCacccaccgcuuuaauUGUGGGgGugGg -3'
miRNA:   3'- -ACCaG-GUCUGGACUG---------------ACACCCgUugC- -5'
33265 3' -56.1 NC_007605.1 + 39069 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 39818 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 39943 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 38569 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 38819 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 39318 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 39193 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 39568 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 39693 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 38694 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 38944 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 39443 0.66 0.919726
Target:  5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3'
miRNA:   3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 166516 0.66 0.914011
Target:  5'- cGGaUCAGuCgCUGGCUgGUGGGCAuCGg -3'
miRNA:   3'- aCCaGGUCuG-GACUGA-CACCCGUuGC- -5'
33265 3' -56.1 NC_007605.1 + 109979 0.66 0.901879
Target:  5'- ---aCCAGACCUGgaagaugaggguGCUcaaaccGUGGGCGACa -3'
miRNA:   3'- accaGGUCUGGAC------------UGA------CACCCGUUGc -5'
33265 3' -56.1 NC_007605.1 + 120224 0.67 0.888829
Target:  5'- cGGaCCAGGCgcauaCUGGCccUGGGCAGCa -3'
miRNA:   3'- aCCaGGUCUG-----GACUGacACCCGUUGc -5'
33265 3' -56.1 NC_007605.1 + 151677 0.67 0.881967
Target:  5'- cGG-CgGGGCCUGGgUaGUagGGGCAACGa -3'
miRNA:   3'- aCCaGgUCUGGACUgA-CA--CCCGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 84661 0.67 0.881967
Target:  5'- aUGGcUCCAGccgaGCCUGgacACUcaGUGGGcCGACGg -3'
miRNA:   3'- -ACC-AGGUC----UGGAC---UGA--CACCC-GUUGC- -5'
33265 3' -56.1 NC_007605.1 + 171180 0.67 0.86759
Target:  5'- gGGUCCgcGGGCUccgggGGCUGcGGGCggUGg -3'
miRNA:   3'- aCCAGG--UCUGGa----CUGACaCCCGuuGC- -5'
33265 3' -56.1 NC_007605.1 + 170120 0.67 0.86759
Target:  5'- gGGUCCgcGGGCUccgggGGCUGcGGGCggUGg -3'
miRNA:   3'- aCCAGG--UCUGGa----CUGACaCCCGuuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.