Results 21 - 40 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 31408 | 0.66 | 0.817569 |
Target: 5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3' miRNA: 3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 25270 | 0.66 | 0.817569 |
Target: 5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3' miRNA: 3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 28562 | 0.66 | 0.842357 |
Target: 5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3' miRNA: 3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 114401 | 0.66 | 0.808968 |
Target: 5'- uAGCCAccgugGCCAgGCCcgaGGUUCUCUUCa -3' miRNA: 3'- -UCGGUaa---CGGU-CGGa--CCAAGGGAGGg -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 2857 | 0.66 | 0.834271 |
Target: 5'- gGGCCggUGgCGGUCUGGUaguaCCagCCCa -3' miRNA: 3'- -UCGGuaACgGUCGGACCAag--GGa-GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 113177 | 0.66 | 0.850257 |
Target: 5'- aAGCUg--GCCAGgCUGGUgacaaaCUCUCUCa -3' miRNA: 3'- -UCGGuaaCGGUCgGACCAa-----GGGAGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 70110 | 0.66 | 0.850257 |
Target: 5'- -uCCAcUGCCAccCCUGGguucaUUUCCUCCCg -3' miRNA: 3'- ucGGUaACGGUc-GGACC-----AAGGGAGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 19355 | 0.66 | 0.842357 |
Target: 5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3' miRNA: 3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 31631 | 0.66 | 0.842357 |
Target: 5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3' miRNA: 3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 106664 | 0.66 | 0.808968 |
Target: 5'- aGGCC--UGCCAGCCgccgcuuggaGGcUCCCUggagCCCc -3' miRNA: 3'- -UCGGuaACGGUCGGa---------CCaAGGGA----GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 53574 | 0.66 | 0.834271 |
Target: 5'- uGCCAgggGCCuggcGCUUGGggCCucggcuggCUCCCa -3' miRNA: 3'- uCGGUaa-CGGu---CGGACCaaGG--------GAGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 13217 | 0.66 | 0.842357 |
Target: 5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3' miRNA: 3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 16063 | 0.66 | 0.817569 |
Target: 5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3' miRNA: 3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 34700 | 0.66 | 0.842357 |
Target: 5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3' miRNA: 3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 22424 | 0.66 | 0.842357 |
Target: 5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3' miRNA: 3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 35221 | 0.66 | 0.850257 |
Target: 5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3' miRNA: 3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 61065 | 0.66 | 0.817569 |
Target: 5'- gGGCCccu-CCGauGCCUGGgagUCCC-CCCa -3' miRNA: 3'- -UCGGuaacGGU--CGGACCa--AGGGaGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 16286 | 0.66 | 0.842357 |
Target: 5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3' miRNA: 3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 61862 | 0.66 | 0.850257 |
Target: 5'- cGCCAUgaUGCUGGCCUcugugccccGGgugUCCCgCUCg -3' miRNA: 3'- uCGGUA--ACGGUCGGA---------CCa--AGGGaGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 32152 | 0.66 | 0.850257 |
Target: 5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3' miRNA: 3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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