miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 16468 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 16808 0.66 0.850257
Target:  5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 18212 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 18726 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 18907 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 18987 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 19132 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 19355 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 19424 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 19537 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 19877 0.66 0.850257
Target:  5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 21281 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 21795 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 21975 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 22056 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 22201 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 22424 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 22493 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 22606 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 22946 0.66 0.817569
Target:  5'- gAGCCccuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu--AACGGucGGACCaa-GGGa-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.