miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 160 0.67 0.800211
Target:  5'- cGCCA---CCGGCUUGG--CCCUCUCa -3'
miRNA:   3'- uCGGUaacGGUCGGACCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 2857 0.66 0.834271
Target:  5'- gGGCCggUGgCGGUCUGGUaguaCCagCCCa -3'
miRNA:   3'- -UCGGuaACgGUCGGACCAag--GGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 2925 0.68 0.716749
Target:  5'- gGGCCAUU-CCAGCCaUGGagcggacugacggcCCCUCCg -3'
miRNA:   3'- -UCGGUAAcGGUCGG-ACCaa------------GGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 4088 1.11 0.001352
Target:  5'- cAGCCAUUGCCAGCCUGGUUCCCUCCCu -3'
miRNA:   3'- -UCGGUAACGGUCGGACCAAGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 12074 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 12588 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 12769 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 12850 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 12994 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 13217 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 13286 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 13399 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 13739 0.66 0.850257
Target:  5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 15143 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 15657 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 15838 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 15919 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 16063 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 16286 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 16355 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.