Results 1 - 20 of 133 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 4088 | 1.11 | 0.001352 |
Target: 5'- cAGCCAUUGCCAGCCUGGUUCCCUCCCu -3' miRNA: 3'- -UCGGUAACGGUCGGACCAAGGGAGGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 164801 | 0.75 | 0.342678 |
Target: 5'- uGCCuUUGCCAGcCCUGGUcCUCUgCCg -3' miRNA: 3'- uCGGuAACGGUC-GGACCAaGGGAgGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 168803 | 0.74 | 0.382025 |
Target: 5'- gGGCCGUcGCgGGCCcGGUgggcCCCUCUCa -3' miRNA: 3'- -UCGGUAaCGgUCGGaCCAa---GGGAGGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 171657 | 0.74 | 0.398585 |
Target: 5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3' miRNA: 3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 170059 | 0.74 | 0.398585 |
Target: 5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3' miRNA: 3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 171119 | 0.74 | 0.398585 |
Target: 5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3' miRNA: 3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 170597 | 0.74 | 0.398585 |
Target: 5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3' miRNA: 3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 150729 | 0.72 | 0.478457 |
Target: 5'- aGGCCuggUGCCAGCCgaccacgUCCCgugUCCCa -3' miRNA: 3'- -UCGGua-ACGGUCGGacca---AGGG---AGGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 131436 | 0.72 | 0.506799 |
Target: 5'- cGCCAUuugcUGUCGGCCuccgUGGUuuUCCCUCUa -3' miRNA: 3'- uCGGUA----ACGGUCGG----ACCA--AGGGAGGg -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 131904 | 0.71 | 0.565426 |
Target: 5'- gAGCCcaagGCCGGCCaGG--CCCUCCUc -3' miRNA: 3'- -UCGGuaa-CGGUCGGaCCaaGGGAGGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 105678 | 0.71 | 0.57539 |
Target: 5'- uGCCAgaagGCCGGCCUcg--CCCgUCCCa -3' miRNA: 3'- uCGGUaa--CGGUCGGAccaaGGG-AGGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 67868 | 0.7 | 0.585392 |
Target: 5'- uGGCCAcggcgGCCAGCCgGGgg-CCUCCa -3' miRNA: 3'- -UCGGUaa---CGGUCGGaCCaagGGAGGg -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 81480 | 0.7 | 0.61557 |
Target: 5'- gGGCCuAUUGuCCGGcCCUGGgagCCaUCCCu -3' miRNA: 3'- -UCGG-UAAC-GGUC-GGACCaa-GGgAGGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 154291 | 0.7 | 0.625663 |
Target: 5'- aGGCCg--GCUAGCCUGuGcUCuUCUCCCg -3' miRNA: 3'- -UCGGuaaCGGUCGGAC-CaAG-GGAGGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 108278 | 0.7 | 0.625663 |
Target: 5'- cAGCCAccgGCCaaGGuCCUGGg--CCUCCCa -3' miRNA: 3'- -UCGGUaa-CGG--UC-GGACCaagGGAGGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 131060 | 0.7 | 0.635761 |
Target: 5'- uAGCCAgcauCCAGuCCUGacucauGUUUCCUCCCu -3' miRNA: 3'- -UCGGUaac-GGUC-GGAC------CAAGGGAGGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 128141 | 0.69 | 0.65594 |
Target: 5'- gGGgCAUUGcCCAGCUUGGgcaCCUgucgCCCg -3' miRNA: 3'- -UCgGUAAC-GGUCGGACCaa-GGGa---GGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 154125 | 0.69 | 0.65594 |
Target: 5'- cGCCAaccUGCaGGcCCUGGccCCCUCCCc -3' miRNA: 3'- uCGGUa--ACGgUC-GGACCaaGGGAGGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 74490 | 0.69 | 0.676046 |
Target: 5'- gAGCCGcUG-CGGCCUGGUUCugacgcugcaCCUgCCg -3' miRNA: 3'- -UCGGUaACgGUCGGACCAAG----------GGAgGG- -5' |
|||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 151575 | 0.69 | 0.676046 |
Target: 5'- uGGCCGUgGCCAGguacgggCUGGUgggcUCCCUCUg -3' miRNA: 3'- -UCGGUAaCGGUCg------GACCA----AGGGAGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home