miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 22056 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 25044 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 28113 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 31182 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 34251 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 46865 0.69 0.696011
Target:  5'- gGGCCAgagcgGCCcuuGCCUGGgUCUCUCa- -3'
miRNA:   3'- -UCGGUaa---CGGu--CGGACCaAGGGAGgg -5'
33266 5' -58.1 NC_007605.1 + 12850 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 15919 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 18987 0.68 0.705919
Target:  5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3'
miRNA:   3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 21975 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 18907 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 15838 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 150729 0.72 0.478457
Target:  5'- aGGCCuggUGCCAGCCgaccacgUCCCgugUCCCa -3'
miRNA:   3'- -UCGGua-ACGGUCGGacca---AGGG---AGGG- -5'
33266 5' -58.1 NC_007605.1 + 131904 0.71 0.565426
Target:  5'- gAGCCcaagGCCGGCCaGG--CCCUCCUc -3'
miRNA:   3'- -UCGGuaa-CGGUCGGaCCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 105678 0.71 0.57539
Target:  5'- uGCCAgaagGCCGGCCUcg--CCCgUCCCa -3'
miRNA:   3'- uCGGUaa--CGGUCGGAccaaGGG-AGGG- -5'
33266 5' -58.1 NC_007605.1 + 81480 0.7 0.61557
Target:  5'- gGGCCuAUUGuCCGGcCCUGGgagCCaUCCCu -3'
miRNA:   3'- -UCGG-UAAC-GGUC-GGACCaa-GGgAGGG- -5'
33266 5' -58.1 NC_007605.1 + 108278 0.7 0.625663
Target:  5'- cAGCCAccgGCCaaGGuCCUGGg--CCUCCCa -3'
miRNA:   3'- -UCGGUaa-CGG--UC-GGACCaagGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 154291 0.7 0.625663
Target:  5'- aGGCCg--GCUAGCCUGuGcUCuUCUCCCg -3'
miRNA:   3'- -UCGGuaaCGGUCGGAC-CaAG-GGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 131060 0.7 0.635761
Target:  5'- uAGCCAgcauCCAGuCCUGacucauGUUUCCUCCCu -3'
miRNA:   3'- -UCGGUaac-GGUC-GGAC------CAAGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 12769 0.69 0.696011
Target:  5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.