miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 4088 1.11 0.001352
Target:  5'- cAGCCAUUGCCAGCCUGGUUCCCUCCCu -3'
miRNA:   3'- -UCGGUAACGGUCGGACCAAGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 21795 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 15657 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 61862 0.66 0.850257
Target:  5'- cGCCAUgaUGCUGGCCUcugugccccGGgugUCCCgCUCg -3'
miRNA:   3'- uCGGUA--ACGGUCGGA---------CCa--AGGGaGGG- -5'
33266 5' -58.1 NC_007605.1 + 170597 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 170059 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 67868 0.7 0.585392
Target:  5'- uGGCCAcggcgGCCAGCCgGGgg-CCUCCa -3'
miRNA:   3'- -UCGGUaa---CGGUCGGaCCaagGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 128141 0.69 0.65594
Target:  5'- gGGgCAUUGcCCAGCUUGGgcaCCUgucgCCCg -3'
miRNA:   3'- -UCgGUAAC-GGUCGGACCaa-GGGa---GGG- -5'
33266 5' -58.1 NC_007605.1 + 74490 0.69 0.676046
Target:  5'- gAGCCGcUG-CGGCCUGGUUCugacgcugcaCCUgCCg -3'
miRNA:   3'- -UCGGUaACgGUCGGACCAAG----------GGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 24864 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 34071 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 151575 0.69 0.676046
Target:  5'- uGGCCGUgGCCAGguacgggCUGGUgggcUCCCUCUg -3'
miRNA:   3'- -UCGGUAaCGGUCg------GACCA----AGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 164801 0.75 0.342678
Target:  5'- uGCCuUUGCCAGcCCUGGUcCUCUgCCg -3'
miRNA:   3'- uCGGuAACGGUC-GGACCAaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 31002 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 171657 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 154125 0.69 0.65594
Target:  5'- cGCCAaccUGCaGGcCCUGGccCCCUCCCc -3'
miRNA:   3'- uCGGUa--ACGgUC-GGACCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 27933 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 18726 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 171119 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 131436 0.72 0.506799
Target:  5'- cGCCAUuugcUGUCGGCCuccgUGGUuuUCCCUCUa -3'
miRNA:   3'- uCGGUA----ACGGUCGG----ACCA--AGGGAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.