miRNA display CGI


Results 21 - 40 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 51265 0.67 0.782262
Target:  5'- aGGCCAUgGCCcaaAGauucCCUGGagcUCCUUCCCc -3'
miRNA:   3'- -UCGGUAaCGG---UC----GGACCa--AGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 15657 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 151575 0.69 0.676046
Target:  5'- uGGCCGUgGCCAGguacgggCUGGUgggcUCCCUCUg -3'
miRNA:   3'- -UCGGUAaCGGUCg------GACCA----AGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 171119 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 64854 0.66 0.841557
Target:  5'- cGCCccaggUGCCuauagagGGCCUGGgUCaCgUCCCa -3'
miRNA:   3'- uCGGua---ACGG-------UCGGACCaAG-GgAGGG- -5'
33266 5' -58.1 NC_007605.1 + 40525 0.67 0.800211
Target:  5'- -aCCAggGuCCGGCCUGGgagcgcaCCC-CCCa -3'
miRNA:   3'- ucGGUaaC-GGUCGGACCaa-----GGGaGGG- -5'
33266 5' -58.1 NC_007605.1 + 21795 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 171657 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 58244 0.67 0.800211
Target:  5'- cGGCCuccgcgGCCccGGCCUccagCCCUCCCc -3'
miRNA:   3'- -UCGGuaa---CGG--UCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 164801 0.75 0.342678
Target:  5'- uGCCuUUGCCAGcCCUGGUcCUCUgCCg -3'
miRNA:   3'- uCGGuAACGGUC-GGACCAaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 18726 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 40404 0.67 0.787705
Target:  5'- uGCCAUggggacccccUGCCAGUCggcgcggGGUcccaggaccacgcCCCUCCCu -3'
miRNA:   3'- uCGGUA----------ACGGUCGGa------CCAa------------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 31002 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 74490 0.69 0.676046
Target:  5'- gAGCCGcUG-CGGCCUGGUUCugacgcugcaCCUgCCg -3'
miRNA:   3'- -UCGGUaACgGUCGGACCAAG----------GGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 67868 0.7 0.585392
Target:  5'- uGGCCAcggcgGCCAGCCgGGgg-CCUCCa -3'
miRNA:   3'- -UCGGUaa---CGGUCGGaCCaagGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 170597 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 34700 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 101348 0.66 0.841557
Target:  5'- cGCCGggGCCGcauucccugcaucGUCUGcGUgggCUCUCCCa -3'
miRNA:   3'- uCGGUaaCGGU-------------CGGAC-CAa--GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 61065 0.66 0.817569
Target:  5'- gGGCCccu-CCGauGCCUGGgagUCCC-CCCa -3'
miRNA:   3'- -UCGGuaacGGU--CGGACCa--AGGGaGGG- -5'
33266 5' -58.1 NC_007605.1 + 54096 0.67 0.803732
Target:  5'- aAGCCc---CCgacgaugaacuccggAGCCUGcUUCCCUCCCg -3'
miRNA:   3'- -UCGGuaacGG---------------UCGGACcAAGGGAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.