miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 171657 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 171119 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 170597 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 170059 0.74 0.398585
Target:  5'- uGCCGggGUCAGcCCUGGggCCCUUCg -3'
miRNA:   3'- uCGGUaaCGGUC-GGACCaaGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 168803 0.74 0.382025
Target:  5'- gGGCCGUcGCgGGCCcGGUgggcCCCUCUCa -3'
miRNA:   3'- -UCGGUAaCGgUCGGaCCAa---GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 164801 0.75 0.342678
Target:  5'- uGCCuUUGCCAGcCCUGGUcCUCUgCCg -3'
miRNA:   3'- uCGGuAACGGUC-GGACCAaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 164444 0.68 0.735246
Target:  5'- gGGCCcugGCCAGCCUGacugaCUUCCUg -3'
miRNA:   3'- -UCGGuaaCGGUCGGACcaag-GGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 164284 0.67 0.791306
Target:  5'- cAGCCAgaGCCAGCCgGG-UCCgUgCg -3'
miRNA:   3'- -UCGGUaaCGGUCGGaCCaAGGgAgGg -5'
33266 5' -58.1 NC_007605.1 + 164021 0.66 0.817569
Target:  5'- uAGCCGguccCCAGUgUGGccaCCUCCCu -3'
miRNA:   3'- -UCGGUaac-GGUCGgACCaagGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 163371 0.68 0.704931
Target:  5'- uGGCUgcGUuacaccgauauaaUGCCAGCCUGG--CCC-CCCa -3'
miRNA:   3'- -UCGG--UA-------------ACGGUCGGACCaaGGGaGGG- -5'
33266 5' -58.1 NC_007605.1 + 159675 0.66 0.842357
Target:  5'- gAGCCcg-GCCcGUCcGGcgCCCUCUCg -3'
miRNA:   3'- -UCGGuaaCGGuCGGaCCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 159508 0.67 0.771236
Target:  5'- uGCCccaGCCGGCCgGGgcaccuccgggCUCUCCCg -3'
miRNA:   3'- uCGGuaaCGGUCGGaCCaa---------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 155197 0.68 0.744859
Target:  5'- cAGCCucGUUGgUGGCCgugGGgaagCCCUCCUc -3'
miRNA:   3'- -UCGG--UAACgGUCGGa--CCaa--GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 154291 0.7 0.625663
Target:  5'- aGGCCg--GCUAGCCUGuGcUCuUCUCCCg -3'
miRNA:   3'- -UCGGuaaCGGUCGGAC-CaAG-GGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 154125 0.69 0.65594
Target:  5'- cGCCAaccUGCaGGcCCUGGccCCCUCCCc -3'
miRNA:   3'- uCGGUa--ACGgUC-GGACCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 151934 0.67 0.800211
Target:  5'- cGGCCGUgUGCauGCCuuUGGUggggCCUUCCCu -3'
miRNA:   3'- -UCGGUA-ACGguCGG--ACCAa---GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 151575 0.69 0.676046
Target:  5'- uGGCCGUgGCCAGguacgggCUGGUgggcUCCCUCUg -3'
miRNA:   3'- -UCGGUAaCGGUCg------GACCA----AGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 150729 0.72 0.478457
Target:  5'- aGGCCuggUGCCAGCCgaccacgUCCCgugUCCCa -3'
miRNA:   3'- -UCGGua-ACGGUCGGacca---AGGG---AGGG- -5'
33266 5' -58.1 NC_007605.1 + 143340 0.66 0.842357
Target:  5'- -aCCAggGuCCGGCCUGGgagcgcaccCCCaUCCCc -3'
miRNA:   3'- ucGGUaaC-GGUCGGACCaa-------GGG-AGGG- -5'
33266 5' -58.1 NC_007605.1 + 131904 0.71 0.565426
Target:  5'- gAGCCcaagGCCGGCCaGG--CCCUCCUc -3'
miRNA:   3'- -UCGGuaa-CGGUCGGaCCaaGGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.