miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 131436 0.72 0.506799
Target:  5'- cGCCAUuugcUGUCGGCCuccgUGGUuuUCCCUCUa -3'
miRNA:   3'- uCGGUA----ACGGUCGG----ACCA--AGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 131060 0.7 0.635761
Target:  5'- uAGCCAgcauCCAGuCCUGacucauGUUUCCUCCCu -3'
miRNA:   3'- -UCGGUaac-GGUC-GGAC------CAAGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 129684 0.67 0.800211
Target:  5'- cAGCCAUUGCCAGUCUca--CCCacagcaugaCCCa -3'
miRNA:   3'- -UCGGUAACGGUCGGAccaaGGGa--------GGG- -5'
33266 5' -58.1 NC_007605.1 + 128141 0.69 0.65594
Target:  5'- gGGgCAUUGcCCAGCUUGGgcaCCUgucgCCCg -3'
miRNA:   3'- -UCgGUAAC-GGUCGGACCaa-GGGa---GGG- -5'
33266 5' -58.1 NC_007605.1 + 126085 0.67 0.799328
Target:  5'- gGGCCcggacCCGGCCcggagacUGGUggCCCUCCUg -3'
miRNA:   3'- -UCGGuaac-GGUCGG-------ACCAa-GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 123358 0.68 0.725546
Target:  5'- uAGCCGgugcacaGCCcuguGCCUGGccCUCUCCCc -3'
miRNA:   3'- -UCGGUaa-----CGGu---CGGACCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 121559 0.67 0.763788
Target:  5'- uAGUCAUaccUGCCAGguauguCCUGGggUCCCgaagcagcgUCCCa -3'
miRNA:   3'- -UCGGUA---ACGGUC------GGACCa-AGGG---------AGGG- -5'
33266 5' -58.1 NC_007605.1 + 118534 0.66 0.850257
Target:  5'- cAGCCGUUGU--GCCUGucacGUUCCCcgCCg -3'
miRNA:   3'- -UCGGUAACGguCGGAC----CAAGGGa-GGg -5'
33266 5' -58.1 NC_007605.1 + 117564 0.68 0.735246
Target:  5'- uGGCCAUUGCCucaaucauuggGGaauCCUGcc-CCCUCCCc -3'
miRNA:   3'- -UCGGUAACGG-----------UC---GGACcaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 114401 0.66 0.808968
Target:  5'- uAGCCAccgugGCCAgGCCcgaGGUUCUCUUCa -3'
miRNA:   3'- -UCGGUaa---CGGU-CGGa--CCAAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 113177 0.66 0.850257
Target:  5'- aAGCUg--GCCAGgCUGGUgacaaaCUCUCUCa -3'
miRNA:   3'- -UCGGuaaCGGUCgGACCAa-----GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 108278 0.7 0.625663
Target:  5'- cAGCCAccgGCCaaGGuCCUGGg--CCUCCCa -3'
miRNA:   3'- -UCGGUaa-CGG--UC-GGACCaagGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 106664 0.66 0.808968
Target:  5'- aGGCC--UGCCAGCCgccgcuuggaGGcUCCCUggagCCCc -3'
miRNA:   3'- -UCGGuaACGGUCGGa---------CCaAGGGA----GGG- -5'
33266 5' -58.1 NC_007605.1 + 105678 0.71 0.57539
Target:  5'- uGCCAgaagGCCGGCCUcg--CCCgUCCCa -3'
miRNA:   3'- uCGGUaa--CGGUCGGAccaaGGG-AGGG- -5'
33266 5' -58.1 NC_007605.1 + 105014 0.67 0.800211
Target:  5'- aAGCUAUUaGCCGGU--GGUUCCC-CCa -3'
miRNA:   3'- -UCGGUAA-CGGUCGgaCCAAGGGaGGg -5'
33266 5' -58.1 NC_007605.1 + 101348 0.66 0.841557
Target:  5'- cGCCGggGCCGcauucccugcaucGUCUGcGUgggCUCUCCCa -3'
miRNA:   3'- uCGGUaaCGGU-------------CGGAC-CAa--GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 94969 0.66 0.842357
Target:  5'- cGGCgAaacuuggGCCAGCCcgGGgggaCCUCCCc -3'
miRNA:   3'- -UCGgUaa-----CGGUCGGa-CCaag-GGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 91595 0.67 0.800211
Target:  5'- cGGCCccUGCCuGCCucuuUGGcUCCCaCCCc -3'
miRNA:   3'- -UCGGuaACGGuCGG----ACCaAGGGaGGG- -5'
33266 5' -58.1 NC_007605.1 + 84376 0.68 0.715768
Target:  5'- cAGCCAagaGCCAcGCCUGaaUCCCaggCCCc -3'
miRNA:   3'- -UCGGUaa-CGGU-CGGACcaAGGGa--GGG- -5'
33266 5' -58.1 NC_007605.1 + 81480 0.7 0.61557
Target:  5'- gGGCCuAUUGuCCGGcCCUGGgagCCaUCCCu -3'
miRNA:   3'- -UCGG-UAAC-GGUC-GGACCaa-GGgAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.