Results 41 - 60 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33266 | 5' | -58.1 | NC_007605.1 | + | 24350 | 0.67 | 0.800211 |
Target: 5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3' miRNA: 3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 24864 | 0.68 | 0.735246 |
Target: 5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3' miRNA: 3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 25044 | 0.69 | 0.696011 |
Target: 5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3' miRNA: 3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 25125 | 0.68 | 0.705919 |
Target: 5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3' miRNA: 3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 25270 | 0.66 | 0.817569 |
Target: 5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3' miRNA: 3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 25493 | 0.66 | 0.842357 |
Target: 5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3' miRNA: 3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 25562 | 0.67 | 0.800211 |
Target: 5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3' miRNA: 3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 25675 | 0.68 | 0.735246 |
Target: 5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3' miRNA: 3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 26014 | 0.66 | 0.850257 |
Target: 5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3' miRNA: 3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 27419 | 0.67 | 0.800211 |
Target: 5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3' miRNA: 3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 27933 | 0.68 | 0.735246 |
Target: 5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3' miRNA: 3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 28113 | 0.69 | 0.696011 |
Target: 5'- cGCCuccucgggGCCAGCCgccggGGUUgguucugcCCCUCUCu -3' miRNA: 3'- uCGGuaa-----CGGUCGGa----CCAA--------GGGAGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 28194 | 0.68 | 0.705919 |
Target: 5'- gAGCCccucggGCCcGCCUccaGGcgCCCUCCUg -3' miRNA: 3'- -UCGGuaa---CGGuCGGA---CCaaGGGAGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 28339 | 0.66 | 0.817569 |
Target: 5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3' miRNA: 3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 28562 | 0.66 | 0.842357 |
Target: 5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3' miRNA: 3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 28631 | 0.67 | 0.800211 |
Target: 5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3' miRNA: 3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 28744 | 0.68 | 0.735246 |
Target: 5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3' miRNA: 3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 29083 | 0.66 | 0.850257 |
Target: 5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3' miRNA: 3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 30488 | 0.67 | 0.800211 |
Target: 5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3' miRNA: 3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5' |
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33266 | 5' | -58.1 | NC_007605.1 | + | 31002 | 0.68 | 0.735246 |
Target: 5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3' miRNA: 3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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